FMO13504.5prime Sequence
973 bp (973 high quality bases) assembled on 2013-02-11
> FMO13504.5prime
CAGTCGACATGAGAAGAATTGGTCTTTTAAATAGTTTAATGCGCCAGAAA
ACGACTGCCAGAAACTTGTTTCAGTTCGGCAAAGTTAAGGGAGATACTGG
CAAATATGAACAGATCGTGTCCACCGGCCAAGTTTCCCCGGAACGTTTTG
TGCCCGAGGAGATCAAGAAACCGGCGTACTACTTCAAGAATATGCCACCG
GGTAACACGCTGGGATCGCCCGAAATCAAAAGCCAGGTTCAGATTGATGC
CATGCGTCTAAGCGGCAGACTGGCGGCCAGGATACTGCGCGAATGCGGTA
AACTAGCAACAGTTGGCACAACCACCGATCAGATTGATGCCTTTGCGCAT
GAAAGAATTCTCGAGTCCAAAGCGTATCCGTCGCCGCTGAGATACGCCGG
CTTCCCAAAGTCCATTTGCACGTCGATCAACAATATCGCCTGTCACGGAA
TTCCGGATGACCGGCAGTTGGCCGATGGGGATATTATAAATATTGATGTC
ACAGTCTTTTTGAACGGCTACCATGGCGACTGTTCGGAAACATTTCGGGT
GGGCAACGTGGACGAACGGGGTGGCTTTCTCGTGGAGGCCACTAAATCCT
GTTTGGATCAGTGCATTTCGCTGTGCGGCCCCGGTGTGGAATTCAATGAG
ATTGGAAAGTTCATAGACAGATATTGCGACGAACATGATCTGGCATCGAT
AGCTGCTTTCATTGGACATGGAATCGGTAGCTATTTCCACGGCCCCCCGG
AGATACTACACTATTATAATGAGATTCCTGGAAAGATGCAGCCCGGCATG
ACCTTCACCATTGAACCCATTCTGTCCCTGGGCGGAGCAGAAATAGCAGT
GCTGCAGATGGCTGGACGGCCATTAGTTTGGATGGCGCACGTAGCGCCCA
GTTCGAGCACACCATTCTGATACCGAGACGGGAACGGAGATACTTACAGA
GATCAAGCAAGCTTTCTAGACAT
FMO13504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5188-RA | 1050 | CG5188-RA | 20..970 | 9..956 | 4680 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10428985..10429663 | 91..769 | 3380 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10429715..10429899 | 766..948 | 825 | 98.9 | Plus |
| 2L | 23513712 | 2L | 10428848..10428930 | 9..91 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:49:10 has no hits.
FMO13504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:00 Download gff for
FMO13504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 16..966 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:24 Download gff for
FMO13504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 20..970 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:43 Download gff for
FMO13504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 20..970 | 9..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:43 Download gff for
FMO13504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10428848..10428930 | 9..91 | 100 | -> | Plus |
| 2L | 10428986..10429659 | 92..765 | 100 | -> | Plus |
| 2L | 10429715..10429908 | 766..956 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:24 Download gff for
FMO13504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10428848..10428930 | 9..91 | 100 | -> | Plus |
| arm_2L | 10428986..10429659 | 92..765 | 100 | -> | Plus |
| arm_2L | 10429715..10429908 | 766..956 | 98 | | Plus |
