FMO13505.5prime Sequence
1146 bp (1046 high quality bases) assembled on 2013-02-11
> FMO13505.5prime
CAGTCGACATGAAGGAGTTCGACGATTTTAATTTTAGCGTTGAGAAATAT
ACCAAGGACCTGACACGAGAATGTGTGGGTGGCAGCGATTTGCAGCAGCG
AAAAAAGGAAATCGAGGCCTACAACGAAACGACGGCAGCAACGCTCAAGC
AAACATGCAAAAAGAACTATATGGAGTTTATACAGACGGCCAAGGAGATA
TCACATCTCGAGTCGGAAATGTATCAACTGTCGCACATTCTGATTGAGCA
GCGCAATATTCTGGCCACCATGACGGATGGCAAGACTTCCAGTCACCTGA
AGGCAGAGAGTTTGGAGGCGGAGAGCACTACGGCGACGGAGGATCTGGAG
AATAGCCATGCCACGCGGGCGGTCAAGGAAATGGTCCAGGGCTTCAATGG
CAATCTGGAAGGCAAGACCTTCCTCAACGAGGGAGCTCTAATCGAGTTGG
ACAGTAATGATTATCGACCCATTCAAAGGGTCTTCTTTTTCCTCTTCAAC
GATGTACTGATTGTCTGCAAAGTGAAGCATGATAAGCGCTTGGATTTCCT
CACCGAGTACGACCCCAAGAAAATAGCCGTGATTAACATTAAGGACTTGG
ATGGCGTTAAGAATGCCATTAATATCATTACTCCAGATGGTTCCAAGATC
TATCAAAGCATCACGGCTGCTGGGAAGACGGAGTGGATAGAGAAGCTCGA
AGAGGCCTTCCGCTTTGACCAGCAAAAGAAACCAAAAAAGGGCCAGGCGC
CACAGCCTCCAACTCGGGCCAAACAGCAGTCAAAAGCTTCGACTCCGGAG
AAGGAAACCACACCCCAGAGTCCCGGACAGCCCAAATCCCTGGAGGATGA
GACGCCCGAGTGGCTAAGCACGGGCCAGTGAAGAGATTCAGACCCTGTGG
CCCAACGGCATTTCGAGGATGCCCAGGAGCTGATAAAGCGAACCCAGGAC
TTCTTGCGAAACGAGAACCGAAAGAAGTGCCGCTAGCGGACGCCATTGAA
ACAAAGTGAAGCAGCAGAGCTGAAGCTGATCATGTGCTGCTCAAGGAGTT
GTCAACAGTCCCAATCGCAATCTGCGATCGCCTCTTGGAAAAGCAGCCAG
CGGCCTTCTGGAAGATTCTCGGTAAGAATGGGTTCGCTATCGGCAA
FMO13505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Exo84-RA | 2243 | CG6095-RA | 28..1164 | 8..1145 | 5210 | 98 | Plus |
| Exo84-RB | 2246 | CG6095-RB | 28..1167 | 8..1145 | 5170 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26050988..26051532 | 1075..536 | 2335 | 98.2 | Minus |
| 3R | 32079331 | 3R | 26051586..26051917 | 536..205 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 26051974..26052129 | 204..49 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 26052190..26052230 | 48..8 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:13 has no hits.
FMO13505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:01 Download gff for
FMO13505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exo84-RA | 18..1110 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:25 Download gff for
FMO13505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exo84-RA | 18..1110 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:44 Download gff for
FMO13505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Exo84-RA | 18..1110 | 1..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:44 Download gff for
FMO13505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26051587..26051917 | 205..535 | 100 | <- | Minus |
| 3R | 26051974..26052129 | 49..204 | 100 | <- | Minus |
| 3R | 26052190..26052236 | 1..48 | 91 | | Minus |
| 3R | 26050971..26051532 | 536..1093 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:25 Download gff for
FMO13505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21876693..21877254 | 536..1093 | 96 | <- | Minus |
| arm_3R | 21877309..21877639 | 205..535 | 100 | <- | Minus |
| arm_3R | 21877696..21877851 | 49..204 | 100 | <- | Minus |
| arm_3R | 21877912..21877958 | 1..48 | 91 | | Minus |
