FMO13506.5prime Sequence
1060 bp (863 high quality bases) assembled on 2013-02-11
> FMO13506.5prime
CAGTCGACATGGGGCGGCTAACCATTTGGTTCCTACTGGGACTAACGTTA
ATCGCCGTTTCCAATAATGTTGGGTTTGTCAATGCCGATGTCGGACCAAG
CGAATCAGAATGTCGACCCTACATTGAAAAGGCTATTCATGAATTGAAAA
CAGATGGTGTCAGGGATGGATCTGGAGAACTGCGATCCGATCAGCCACGT
GGGGACGACGACGATGACGACGATGATGAGGACGCGAAAAGTGCCAACGA
TTTGGATGGAGATGGAATACCCGATGACGAGGACGATGATATCGATGGGG
ACGGCATTCCGAACGAAAAGGACGATGATATCGATGGAGATGGCATACCG
AACGACGAGGATGATGACATCGATGGCGATGGCATCCCGAATGAAGATGA
CGACGATATTGATGGGGATGGTGTGCCCAACTCCAAGGACGAGGACATCG
ATGGGGATGGTGTGCCCAACTCCAAGGACGAAGACATCGATGGCGATGGC
AAGGCAAATCACGAGGATGATGATCTAGATGGTGATGGCACTCCAAATCA
TGAGGACGAAGATCTCGACGGGGACGGTGTGCCCAACGAGGAAGATGATG
ACCTCGATGGTGATGGCAAAATAAATCACGAGGATGAAGACCTCGATGGT
GATGGAGTGAAAAATGACGAAGACGAGGATCTGGATGGAGATGGCAAAGT
AAATCACGAGGACGAATATCTTGATGGAGATGGCGTGAAGAATGAAAAGG
ACGACGATTTGGATGGCGATGGTACCAACAATTCTCAGATGAAGACCTAG
ATGGTGATGGTGTGCCAAATGAAAAGGATGACGATCTGGATGGAGATGGC
ATCCTGAACGAGCACGACGGTGATGTGGATGGCGATGGAGTTCTCAATGA
ACACGATCACAATGATAGCGATGAGAATGCCGATGATGATGATGACGACG
ATGATGAAGATGACCACGACGCTGGTCAAAAGCGAACCAACGTGAAGTGT
ATGCTGCTCTGTCTGGACATTGGAGTTTCTTTAGTCCGCGAAAAATTTCC
GAAGAGAAAA
FMO13506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9297-RA | 4014 | CG9297-RA | 231..1248 | 9..1022 | 4780 | 98.3 | Plus |
CG9297-RE | 4134 | CG9297-RE | 570..1368 | 228..1022 | 3700 | 98 | Plus |
CG9297-RD | 4127 | CG9297-RD | 563..1361 | 228..1022 | 3700 | 98 | Plus |
CG9297-RE | 4134 | CG9297-RE | 285..504 | 9..228 | 1085 | 99.5 | Plus |
CG9297-RA | 4014 | CG9297-RA | 555..1072 | 255..772 | 565 | 74.9 | Plus |
CG9297-RE | 4134 | CG9297-RE | 675..1192 | 255..772 | 565 | 74.9 | Plus |
CG9297-RA | 4014 | CG9297-RA | 477..994 | 333..849 | 540 | 74.7 | Plus |
CG9297-RE | 4134 | CG9297-RE | 597..1114 | 333..849 | 540 | 74.7 | Plus |
CG9297-RA | 4014 | CG9297-RA | 541..956 | 280..695 | 490 | 75.4 | Plus |
CG9297-RE | 4134 | CG9297-RE | 661..1076 | 280..695 | 490 | 75.4 | Plus |
CG9297-RA | 4014 | CG9297-RA | 502..917 | 319..734 | 475 | 75.2 | Plus |
CG9297-RE | 4134 | CG9297-RE | 622..1037 | 319..734 | 475 | 75.2 | Plus |
CG9297-RA | 4014 | CG9297-RA | 658..1074 | 280..696 | 465 | 74.7 | Plus |
CG9297-RE | 4134 | CG9297-RE | 778..1194 | 280..696 | 465 | 74.7 | Plus |
CG9297-RA | 4014 | CG9297-RA | 502..918 | 436..851 | 425 | 74.2 | Plus |
CG9297-RE | 4134 | CG9297-RE | 622..1038 | 436..851 | 425 | 74.2 | Plus |
CG9297-RA | 4014 | CG9297-RA | 477..760 | 372..655 | 355 | 75.9 | Plus |
CG9297-RA | 4014 | CG9297-RA | 594..877 | 255..538 | 355 | 75.9 | Plus |
CG9297-RE | 4134 | CG9297-RE | 597..880 | 372..655 | 355 | 75.9 | Plus |
CG9297-RE | 4134 | CG9297-RE | 714..997 | 255..538 | 355 | 75.9 | Plus |
CG9297-RA | 4014 | CG9297-RA | 894..1074 | 321..501 | 185 | 73.5 | Plus |
CG9297-RE | 4134 | CG9297-RE | 1014..1194 | 321..501 | 185 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13774452..13774737 | 228..513 | 1430 | 100 | Plus |
3R | 32079331 | 3R | 13775532..13775754 | 788..1009 | 855 | 93.3 | Plus |
3R | 32079331 | 3R | 13773934..13774018 | 69..153 | 425 | 100 | Plus |
3R | 32079331 | 3R | 13774504..13774684 | 319..499 | 425 | 82.3 | Plus |
3R | 32079331 | 3R | 13774543..13774723 | 280..460 | 425 | 82.3 | Plus |
3R | 32079331 | 3R | 13775091..13775169 | 552..630 | 395 | 100 | Plus |
3R | 32079331 | 3R | 13775227..13775305 | 630..708 | 395 | 100 | Plus |
3R | 32079331 | 3R | 13775381..13775459 | 708..786 | 380 | 98.7 | Plus |
3R | 32079331 | 3R | 13774309..13774386 | 151..228 | 375 | 98.7 | Plus |
3R | 32079331 | 3R | 13772350..13772410 | 9..69 | 305 | 100 | Plus |
3R | 32079331 | 3R | 13774479..13774737 | 372..630 | 275 | 73.7 | Plus |
3R | 32079331 | 3R | 13774479..13774606 | 333..460 | 265 | 80.5 | Plus |
3R | 32079331 | 3R | 13774557..13774684 | 255..382 | 265 | 80.5 | Plus |
3R | 32079331 | 3R | 13774504..13774684 | 436..616 | 260 | 76.2 | Plus |
3R | 32079331 | 3R | 13774596..13774725 | 255..384 | 215 | 77.7 | Plus |
3R | 32079331 | 3R | 13774798..13774837 | 513..552 | 200 | 100 | Plus |
3R | 32079331 | 3R | 13775529..13775595 | 630..696 | 200 | 86.6 | Plus |
3R | 32079331 | 3R | 13775230..13775293 | 788..851 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:49:16 has no hits.
FMO13506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:02 Download gff for
FMO13506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9297-RA | 231..1254 | 9..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:27 Download gff for
FMO13506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9297-RA | 231..1254 | 9..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:46 Download gff for
FMO13506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9297-RA | 231..1254 | 9..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:46 Download gff for
FMO13506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13772350..13772410 | 9..69 | 100 | -> | Plus |
3R | 13773935..13774018 | 70..153 | 100 | -> | Plus |
3R | 13774312..13774386 | 154..228 | 98 | -> | Plus |
3R | 13774453..13774737 | 229..513 | 100 | -> | Plus |
3R | 13774799..13774837 | 514..552 | 100 | -> | Plus |
3R | 13775092..13775169 | 553..630 | 100 | -> | Plus |
3R | 13775228..13775305 | 631..708 | 100 | -> | Plus |
3R | 13775382..13775459 | 709..786 | 98 | -> | Plus |
3R | 13775530..13775775 | 787..1029 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:27 Download gff for
FMO13506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9598072..9598132 | 9..69 | 100 | -> | Plus |
arm_3R | 9599657..9599740 | 70..153 | 100 | -> | Plus |
arm_3R | 9600034..9600108 | 154..228 | 98 | -> | Plus |
arm_3R | 9600175..9600459 | 229..513 | 100 | -> | Plus |
arm_3R | 9600521..9600559 | 514..552 | 100 | -> | Plus |
arm_3R | 9600814..9600891 | 553..630 | 100 | -> | Plus |
arm_3R | 9600950..9601027 | 631..708 | 100 | -> | Plus |
arm_3R | 9601104..9601181 | 709..786 | 98 | -> | Plus |
arm_3R | 9601252..9601497 | 787..1029 | 92 | | Plus |