Clone FMO13506 Report

Search the DGRC for FMO13506

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:135
Well:6
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9297-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13506.5prime Sequence

1060 bp (863 high quality bases) assembled on 2013-02-11

> FMO13506.5prime
CAGTCGACATGGGGCGGCTAACCATTTGGTTCCTACTGGGACTAACGTTA
ATCGCCGTTTCCAATAATGTTGGGTTTGTCAATGCCGATGTCGGACCAAG
CGAATCAGAATGTCGACCCTACATTGAAAAGGCTATTCATGAATTGAAAA
CAGATGGTGTCAGGGATGGATCTGGAGAACTGCGATCCGATCAGCCACGT
GGGGACGACGACGATGACGACGATGATGAGGACGCGAAAAGTGCCAACGA
TTTGGATGGAGATGGAATACCCGATGACGAGGACGATGATATCGATGGGG
ACGGCATTCCGAACGAAAAGGACGATGATATCGATGGAGATGGCATACCG
AACGACGAGGATGATGACATCGATGGCGATGGCATCCCGAATGAAGATGA
CGACGATATTGATGGGGATGGTGTGCCCAACTCCAAGGACGAGGACATCG
ATGGGGATGGTGTGCCCAACTCCAAGGACGAAGACATCGATGGCGATGGC
AAGGCAAATCACGAGGATGATGATCTAGATGGTGATGGCACTCCAAATCA
TGAGGACGAAGATCTCGACGGGGACGGTGTGCCCAACGAGGAAGATGATG
ACCTCGATGGTGATGGCAAAATAAATCACGAGGATGAAGACCTCGATGGT
GATGGAGTGAAAAATGACGAAGACGAGGATCTGGATGGAGATGGCAAAGT
AAATCACGAGGACGAATATCTTGATGGAGATGGCGTGAAGAATGAAAAGG
ACGACGATTTGGATGGCGATGGTACCAACAATTCTCAGATGAAGACCTAG
ATGGTGATGGTGTGCCAAATGAAAAGGATGACGATCTGGATGGAGATGGC
ATCCTGAACGAGCACGACGGTGATGTGGATGGCGATGGAGTTCTCAATGA
ACACGATCACAATGATAGCGATGAGAATGCCGATGATGATGATGACGACG
ATGATGAAGATGACCACGACGCTGGTCAAAAGCGAACCAACGTGAAGTGT
ATGCTGCTCTGTCTGGACATTGGAGTTTCTTTAGTCCGCGAAAAATTTCC
GAAGAGAAAA

FMO13506.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9297-RA 4014 CG9297-RA 231..1248 9..1022 4780 98.3 Plus
CG9297-RE 4134 CG9297-RE 570..1368 228..1022 3700 98 Plus
CG9297-RD 4127 CG9297-RD 563..1361 228..1022 3700 98 Plus
CG9297-RE 4134 CG9297-RE 285..504 9..228 1085 99.5 Plus
CG9297-RA 4014 CG9297-RA 555..1072 255..772 565 74.9 Plus
CG9297-RE 4134 CG9297-RE 675..1192 255..772 565 74.9 Plus
CG9297-RA 4014 CG9297-RA 477..994 333..849 540 74.7 Plus
CG9297-RE 4134 CG9297-RE 597..1114 333..849 540 74.7 Plus
CG9297-RA 4014 CG9297-RA 541..956 280..695 490 75.4 Plus
CG9297-RE 4134 CG9297-RE 661..1076 280..695 490 75.4 Plus
CG9297-RA 4014 CG9297-RA 502..917 319..734 475 75.2 Plus
CG9297-RE 4134 CG9297-RE 622..1037 319..734 475 75.2 Plus
CG9297-RA 4014 CG9297-RA 658..1074 280..696 465 74.7 Plus
CG9297-RE 4134 CG9297-RE 778..1194 280..696 465 74.7 Plus
CG9297-RA 4014 CG9297-RA 502..918 436..851 425 74.2 Plus
CG9297-RE 4134 CG9297-RE 622..1038 436..851 425 74.2 Plus
CG9297-RA 4014 CG9297-RA 477..760 372..655 355 75.9 Plus
CG9297-RA 4014 CG9297-RA 594..877 255..538 355 75.9 Plus
CG9297-RE 4134 CG9297-RE 597..880 372..655 355 75.9 Plus
CG9297-RE 4134 CG9297-RE 714..997 255..538 355 75.9 Plus
CG9297-RA 4014 CG9297-RA 894..1074 321..501 185 73.5 Plus
CG9297-RE 4134 CG9297-RE 1014..1194 321..501 185 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13774452..13774737 228..513 1430 100 Plus
3R 32079331 3R 13775532..13775754 788..1009 855 93.3 Plus
3R 32079331 3R 13773934..13774018 69..153 425 100 Plus
3R 32079331 3R 13774504..13774684 319..499 425 82.3 Plus
3R 32079331 3R 13774543..13774723 280..460 425 82.3 Plus
3R 32079331 3R 13775091..13775169 552..630 395 100 Plus
3R 32079331 3R 13775227..13775305 630..708 395 100 Plus
3R 32079331 3R 13775381..13775459 708..786 380 98.7 Plus
3R 32079331 3R 13774309..13774386 151..228 375 98.7 Plus
3R 32079331 3R 13772350..13772410 9..69 305 100 Plus
3R 32079331 3R 13774479..13774737 372..630 275 73.7 Plus
3R 32079331 3R 13774479..13774606 333..460 265 80.5 Plus
3R 32079331 3R 13774557..13774684 255..382 265 80.5 Plus
3R 32079331 3R 13774504..13774684 436..616 260 76.2 Plus
3R 32079331 3R 13774596..13774725 255..384 215 77.7 Plus
3R 32079331 3R 13774798..13774837 513..552 200 100 Plus
3R 32079331 3R 13775529..13775595 630..696 200 86.6 Plus
3R 32079331 3R 13775230..13775293 788..851 185 85.9 Plus
Blast to na_te.dros performed on 2014-11-28 18:49:16 has no hits.

FMO13506.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:02 Download gff for FMO13506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9297-RA 231..1254 9..1029 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:27 Download gff for FMO13506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9297-RA 231..1254 9..1029 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:46 Download gff for FMO13506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9297-RA 231..1254 9..1029 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:46 Download gff for FMO13506.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13772350..13772410 9..69 100 -> Plus
3R 13773935..13774018 70..153 100 -> Plus
3R 13774312..13774386 154..228 98 -> Plus
3R 13774453..13774737 229..513 100 -> Plus
3R 13774799..13774837 514..552 100 -> Plus
3R 13775092..13775169 553..630 100 -> Plus
3R 13775228..13775305 631..708 100 -> Plus
3R 13775382..13775459 709..786 98 -> Plus
3R 13775530..13775775 787..1029 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:27 Download gff for FMO13506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9598072..9598132 9..69 100 -> Plus
arm_3R 9599657..9599740 70..153 100 -> Plus
arm_3R 9600034..9600108 154..228 98 -> Plus
arm_3R 9600175..9600459 229..513 100 -> Plus
arm_3R 9600521..9600559 514..552 100 -> Plus
arm_3R 9600814..9600891 553..630 100 -> Plus
arm_3R 9600950..9601027 631..708 100 -> Plus
arm_3R 9601104..9601181 709..786 98 -> Plus
arm_3R 9601252..9601497 787..1029 92   Plus