FMO13507.5prime Sequence
1108 bp (965 high quality bases) assembled on 2013-02-11
> FMO13507.5prime
CAGTCGACATGTCGCAGATCTGTAAGCGCGGTTTGTTGATCAGCAACCGA
TTGGCGCCCGCCGCCCTCCGCTGCAAATCAACATGGTTCTCCGAGGTGCA
GATGGGCCCACCCGATGCCATCTTGGGTGTCACGGAAGCCTTCAAGAAGG
ACACCAACCCCAAGAAGATCAACTTGGGCGCTGGCGCCTATCGCGATGAC
AACACCCAGCCCTTCGTGCTCCCCAGTGTTCGGGAGGCCGAGAAGAGAGT
GGTGAGCCGTAATCTGGACAAGGAGTACGCCACAATCATCGGCATTCCCG
AGTTCTACAACAAGGCCATCGAGCTGGCATTGGGCAAGGGATCCAAGCGT
TTGGCGGCCAAGCACAACGTGACCGCCCAGTCCATCAGTGGAACTGGAGC
TCTGCGCATCGGAGCCGCCTTCCTGGCCAAGTTCTGGCAGGGCAACCGCG
AGATCTACATCCCGTCGCCATCGTGGGGCAACCATGTGGCCATTTTCGAG
CACGCCGGTCTGCCGGTGAACCGATACCGCTACTACGACAAGGACACCTG
TGCCCTGGACTTTGGCGGCCTGATCGAGGATCTGAAGAAAATCCCCGAGA
AGAGCATTGTTCTTCTGCACGCCTGCGCCCACAACCCCACTGGAGTGGAT
CCCACTCTGGAGCAGTGGCGTGAGATCTCGGCTCTGGTCAAGAAACGCAA
TCTGTATCCCTTCATCGACATGGCCTACCAAGGCTTCGCCACCGGAGACA
TTGACCGCGACGCCCAGGCGGTCCGCACCTTCGAGGCCGATGGCCACGAC
TTCTGCCTGGCCCAGAGTTTCGCCAAGAACATGGGATTGTATGGTGAGCG
CGCTGGCGCCTTCACCGTGCTGTGCTCCGACGAGGAGGAGCTGCTCGCGT
GATGTCCCAAGTTAAGATCCTGATCCGAGTCTGTACTCAATCCCCCGGTG
CACGGAGCTCGTATTGCCGCCGAGATCCTCAACAACGAGGACTTGGCTCG
TCCCAGTGTCTTGAAGATGCGTAAGCTGATGTCGAACCGCATCATCGATG
TTCGCACCAGCTCAGGAACAATCTAATAAGCTGGATCAGCGAACTGGTAA
CCATTTGT
FMO13507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got2-RA | 1575 | CG4233-RA | 107..1184 | 9..1084 | 4995 | 98.1 | Plus |
| Got2-RB | 1560 | CG4233-RB | 160..1169 | 77..1084 | 4655 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1984911..1985403 | 1077..586 | 1935 | 96 | Minus |
| 2L | 23513712 | 2L | 1985471..1985721 | 587..337 | 1255 | 100 | Minus |
| 2L | 23513712 | 2L | 1985945..1986105 | 237..77 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 1985781..1985885 | 339..235 | 510 | 99 | Minus |
| 2L | 23513712 | 2L | 1987585..1987652 | 76..9 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:20 has no hits.
FMO13507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:03 Download gff for
FMO13507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RA | 105..1195 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:29 Download gff for
FMO13507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RA | 102..1192 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:48 Download gff for
FMO13507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RA | 102..1192 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:48 Download gff for
FMO13507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1984895..1985401 | 588..1090 | 95 | <- | Minus |
| 2L | 1985471..1985719 | 339..587 | 100 | <- | Minus |
| 2L | 1985782..1985883 | 237..338 | 99 | <- | Minus |
| 2L | 1985946..1986105 | 77..236 | 100 | <- | Minus |
| 2L | 1987585..1987656 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:29 Download gff for
FMO13507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1984895..1985401 | 588..1090 | 95 | <- | Minus |
| arm_2L | 1985471..1985719 | 339..587 | 100 | <- | Minus |
| arm_2L | 1985782..1985883 | 237..338 | 99 | <- | Minus |
| arm_2L | 1985946..1986105 | 77..236 | 100 | <- | Minus |
| arm_2L | 1987585..1987656 | 1..76 | 94 | | Minus |
