FMO13508.5prime Sequence
1135 bp (1055 high quality bases) assembled on 2013-02-11
> FMO13508.5prime
CAGTCGACATGATGGTGCTACAGCAACAACAACAACAGCGTCTCTGGGAT
GCAACAACAACGAGCAACACAAATACACAAACACAGCAATCGGCGAATGT
GGAAAGCACGCCAACAAAAGTTTGCCATCAGGAAAATGCAGCGACACACA
CATTTATGCGGCACATGTCGAACTCACCAACACCGCCCTCGCCACTGCGT
TCGCTATCAGACTGCGGAAAGAGCTTCGAGGAGGAGGAACTGGAGCTGGG
CGAGAACTGCGAGATGCCACAGAATCTGAGCAGCAAGCGCCAGGCCAGGG
AACTAGACTCTGAGCTGGAAAACGAGGTCCTGGATCTGGCACCGCCACCG
AAGAGATTGGCCGAGGAGCAAGAGGAGGAAAAGGTGGCCAGTGTCAATCC
ACCACAGCCCGTGGCATTTGCACCGGAGGAAATGCATCAGGCTCTGCAAC
TGCAGTTGCACAGCTACATCGAAATGGTTCGCCAATTGGCGCCGGAGGCG
TTTCCCAATCCCAACCTGGCCACGCAGTTCCTGCTGCAGAACTCACTGCA
AGCCTTAGCGCAGTTTCAGGCCCTGCAACAGATGAAGCAGCAGCAAAGGG
AGGATCCTCTGCCCAGTTACTCCACCCCCTTGGCCAAATCACCACTGAGA
AGTCCATCCCTGAGTCCGGTGCCCCGGCACAGCAAATCCCAGCAGCGAAC
TCCGCCAAACTCGATGACTGCCAATTCTCTGGGAATGAGTAGTGCCGTGA
TGACTCCAAATACGCCCAGCATGCAGCAGCAGCCGCAACTGCAGCAGAGC
ACTCCCAAGCCCACGAGTGGACTAACTGTGGCATCTGCCATGGCCAAGCT
GGAACAATCGCCGGAGAGACCACCGATCTGGAGGAACTGGAACAGTTCGC
CAAGACCTTCAAACAGCGGCGAATCAAGCTGGGCTTCACCCAGGGCGATG
TGGGTCTGGCCATGGGCAAACTGTATGGCATGACTTCTCGCAGACCACCA
TTTCCCGCTTCGAGCCCTCATCTGAGCTTCAAGACATGTGCAAGCTGAGC
CGCCTGCTCCAGTTGCTGGAGATGCGGAACGCACCGGTGGCCAGTCGGCG
GTGGGATGTTCACCATCTCACACGATGACCGTACG
FMO13508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdm2-RA | 2171 | CG12287-RA | 194..1324 | 9..1130 | 5210 | 98.1 | Plus |
| pdm2-RD | 4286 | CG12287-RD | 2454..3439 | 154..1130 | 4485 | 97.8 | Plus |
| pdm2-RC | 3729 | CG12287-RC | 1897..2882 | 154..1130 | 4485 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12684528..12685387 | 208..1062 | 3990 | 99 | Plus |
| 2L | 23513712 | 2L | 12678797..12678941 | 9..153 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 12626546..12626743 | 869..1062 | 595 | 91.4 | Plus |
| 2L | 23513712 | 2L | 12680777..12680833 | 154..210 | 285 | 100 | Plus |
| 3L | 28110227 | 3L | 6791504..6791648 | 908..1048 | 230 | 82.1 | Plus |
Blast to na_te.dros performed 2014-11-28 18:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2470 | 767..894 | 117 | 60.8 | Plus |
FMO13508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:04 Download gff for
FMO13508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm2-RA | 192..1250 | 9..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:32 Download gff for
FMO13508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm2-RA | 194..1252 | 9..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:48 Download gff for
FMO13508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm2-RA | 194..1252 | 9..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:48 Download gff for
FMO13508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12678797..12678941 | 9..153 | 100 | -> | Plus |
| 2L | 12680777..12680833 | 154..210 | 100 | -> | Plus |
| 2L | 12684531..12685387 | 211..1062 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:32 Download gff for
FMO13508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12678797..12678941 | 9..153 | 100 | -> | Plus |
| arm_2L | 12680777..12680833 | 154..210 | 100 | -> | Plus |
| arm_2L | 12684531..12685387 | 211..1062 | 99 | | Plus |
