FMO13509.5prime Sequence
1121 bp (1019 high quality bases) assembled on 2013-02-11
> FMO13509.5prime
CAGTCGACATGCATCTGAGGATCCGTCTCACGTGTCGCAAATATGAAATT
TGGGCTCTGTCCATCTTCTCCCTGGTCACTGGTCTTTATGTCCTGCACTT
CTCCATAGCTCTGATCCTGGTCAACAAAGAGGTGCCCCAAACGCGCGGAA
TGCTGTACCCCAGGGAATCGGAGACGCGGGAGGTGCGATCTCTGGACGGG
ATCTGGAACTTTGTGCGCTCCGACCAGGCGAATCCCACGCAGGGCGTCCG
GGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGCAGGCCCACAATACCCA
TGCCGGTGCCGGCATCCTATAATGACATAACCACGGACAATTTGAGGGAT
CACGTGGGCACAGTGTGGTACGACCGCAAGTTCTTTGTGCCCCGATCGTG
GTCAAAGGATCAGAGGATATGGCTGCGATTCGGCAGTGTTCACTATGAGG
CATATGTGTGGATCAACGGCCAGAAGGTGGTGAAGCATGAAATGGGTCAC
CTACCCTTCGAGGCGGAGGTCACCGATCTTCTGAGCTATGGAGCCGAGAA
TCGGATCACCGTTATGTGCGACAATGCTCTGATTCAGACAACTGTGCCGC
AGGGCAGGATTACGGAAGTGCCCAACGATGGTGGCATGACCATTGTGCAG
AGCTACACCTTTGACTTCTTTAACTATGCGGGAATCCACAGGAGCGTGCA
TCTTTACACCACGCCCCGTACTTTTATCGAGGAGGTTGAGGTCACCACAA
ACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTTCTATAGCGTAAGCGTG
AATGGCAGCGCTGCCAACGAGGCAGATAATGTCTTGCAAATCCAGGCCAA
TTTGTACGATAAGATGGCATATTGGTGGCGATGCCACGTCGGACCAAAAA
CTTGGCGGCAAGCTGCAAGTGAACCCGGTGAGCCCTGTGGCCCTACCTAA
TGCATTCCGACCGGGTTATCTTGTACAGCTGGAAATCAATTGCTGCGACC
ACGATGAGCTCCTGATGTTCTACCGACTGAAAGTGGGAATACGCCACACT
AGTTGACAGCACACAGTCTGATCACGCAGCCCGTAACTTCCTGCTTGAAC
GACGAGATTCGATATCAGGTA
FMO13509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15117-RB | 2338 | CG15117-RB | 108..1159 | 7..1051 | 4935 | 98.7 | Plus |
| CG15117-RA | 2487 | CG15117-RA | 303..1308 | 53..1051 | 4705 | 98.6 | Plus |
| CG15117-RE | 2380 | CG15117-RE | 197..1201 | 54..1051 | 4700 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19124537..19124941 | 458..54 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 19124105..19124418 | 771..458 | 1570 | 100 | Minus |
| 2R | 25286936 | 2R | 19123756..19124037 | 1044..771 | 875 | 94 | Minus |
| 2R | 25286936 | 2R | 19127470..19127517 | 54..7 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:27 has no hits.
FMO13509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:05 Download gff for
FMO13509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 99..1171 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:34 Download gff for
FMO13509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 101..1173 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:50 Download gff for
FMO13509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 101..1173 | 1..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:50 Download gff for
FMO13509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19123736..19124036 | 772..1063 | 94 | <- | Minus |
| 2R | 19124105..19124417 | 459..771 | 100 | <- | Minus |
| 2R | 19124537..19124940 | 55..458 | 100 | <- | Minus |
| 2R | 19127470..19127519 | 1..54 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:34 Download gff for
FMO13509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15011241..15011541 | 772..1063 | 94 | <- | Minus |
| arm_2R | 15011610..15011922 | 459..771 | 100 | <- | Minus |
| arm_2R | 15012042..15012445 | 55..458 | 100 | <- | Minus |
| arm_2R | 15014975..15015024 | 1..54 | 92 | | Minus |
