FMO13511.5prime Sequence
767 bp (767 high quality bases) assembled on 2013-02-11
> FMO13511.5prime
CAGTCGACATGCGTTTAACGCAATATTTGGCCAGCAAGTTGAAGAACTTT
TCCAATCTGCCCAAGGAATACATCGAGCGCAGCAAAAAACAGGTGTACTG
GCAAACTCCGAAGGAGATTAATTACCTACCGCGTACCGTGGAGCGAAAGA
GATTCCGCTACACCACAAATCGTTCATGGACGGGTCAGTTCCGCCAGCAA
AATATGCCCGGAACCGTGCGTCGCAAGGTGCTAGTGGAACCAATTGAGGA
CTGGAGCTTTTTCCGCGGCGATCGTATCGAAGTCCTTGTGGGTAAAGACA
AAGGAAAGCAGGGAATTGTCACCCAGGTTATACCCGAGCGCAATTGGGTA
ATTGTAGAGGGCCTGAACTGGCACTATCGCAAGGTTGGCGGTGAGAAGGA
GTTTCCCGGTATCATTATCAAGTCCGAGGCACCTTTGCACGTCACCAAGG
ACATTCGTCTGGTTGACCCATCGGATCTTCAGGGCACCGACTTTGAGTGG
CGTTTCACGGAGGAGGGCGAGAAAGTGCGGGTGTCCTTGCGATCTGGCCG
AATCATACCCATCCCGGAGACGAACAACCAGACGCACGATTATAAAACAC
CAAACGCCTATATCGAAAGGGAGAAGGATACGCCAGGCGCTGTTGTGGGC
GAGATCACCTTTCAGCCCAAGTTGTCCACATTCGAGATGGACATTATGGA
GGAAATGGGCATCAAAGAGGAACGCACGCCAGTCAAGAGCTATTGGTACG
CAAGCTTTCTAGACCAT
FMO13511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL24-RA | 875 | CG8849-RA | 87..827 | 9..749 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4944474..4944865 | 637..246 | 1960 | 100 | Minus |
| 2L | 23513712 | 2L | 4944927..4945084 | 246..89 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 4944304..4944419 | 749..634 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 4945190..4945275 | 94..9 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:59 has no hits.
FMO13511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:56 Download gff for
FMO13511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 61..816 | 1..757 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:17 Download gff for
FMO13511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 79..834 | 1..757 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:36 Download gff for
FMO13511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 79..834 | 1..757 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:36 Download gff for
FMO13511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4944297..4944416 | 637..757 | 96 | <- | Minus |
| 2L | 4944475..4944864 | 247..636 | 100 | <- | Minus |
| 2L | 4944927..4945080 | 93..246 | 100 | <- | Minus |
| 2L | 4945192..4945283 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:17 Download gff for
FMO13511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4944297..4944416 | 637..757 | 96 | <- | Minus |
| arm_2L | 4944475..4944864 | 247..636 | 100 | <- | Minus |
| arm_2L | 4944927..4945080 | 93..246 | 100 | <- | Minus |
| arm_2L | 4945192..4945283 | 1..92 | 95 | | Minus |
