FMO13512.5prime Sequence
1098 bp (1012 high quality bases) assembled on 2013-02-11
> FMO13512.5prime
CAGTCGACATGTTAAAGCTAGGTCTGGTCATCTTCTGCGTGTTGGTCGCT
AGTGGGCCGACGTGGAGCGCCCGCACCGTGGACAGTCACCTGGGGCAAAA
GGATCTCAGCCGCCTGCAAAAAGTTTTCGTGGACGGATTTGGTTCCAGTG
ACCTGCAGTCGATCTTCTTCTCCAGCCTAAACATTCAACTGACTGATGCC
ACTCAGAAGGAGCCGTTGTGCAAGAAGATTGCTACGCTGCATTCCGAATC
CAAGCTGAACAGCTTCGAAAAAGACTACTACTACATTGGTGCTAGCAGAA
ACCTGGGTTGCTCCGCTAAGATTGACGAGGGTCTGCTTTCCAAGGTGTAT
AGTTCCCTGAACTCGGAGCTCGGCAGCTCTCAGGAGATCTTCTACCGCGT
GGTCACCCACAAAGTGCTCGGCGTGGAGATCAATGAAGCCACTCAGGAAA
AACTAGTGAAGCGTTTGCAAGAACTGCTCAAGAAGGACGACACACTCAGC
GGCCTGGGATACGCTTTCAATGTTGCTCCACTTCTGGGTGCCAGTGCCTC
CTTTATCGCAAATCGCGTGGAGGATGCCATCGTGCAAGCAGATGAAGTTG
ACGGCAAGCTCTTGCAATTCGAAGGCGGTCTCAGTATCACATCCCTGATC
ATCAATGGTGCTTTCGGTGTGAGCAAGACCTTTAACAAGCCCGTGCCCAT
TACTGCTGACCAGGCAGTTAAGTTTGCTAACTACTTCCTTAGCCGCCGAT
CCGTCCAAACCGCCAAAGGAGCTCATGTGCTAATCGAGGCGCTGAAGACT
ATTAGTGGAGCCGATAAAATTGCTCCCGTTTGTGTGCAGCTCATTGGCAA
CGGTCAATTGGACGCTCAGTCGCCGACTCTGAACGTAGCCGTTGTTGATC
TGCTCGGCAAGCCTTTGTCACCTGCCCCCAAAGTCATCAATGCAAAGGTT
ATTCGCAGACGACAGCTCTGTTTAGCTGATAAATTCCCTGTGGCCTCGAA
ATCTCGGACAAACACTTATGTGGCTGATTTGCAGCTAAAGCCAGCTCGCG
CGTACAGCGGAATGAGTGCGATGGGCTACCCAAAACTGCAATCAGGTC
FMO13512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OstDelta-RB | 2198 | CG6370-RB | 190..1240 | 9..1050 | 4990 | 98.8 | Plus |
| OstDelta-RA | 2201 | CG6370-RA | 190..1240 | 9..1050 | 4990 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17765616..17766392 | 1031..261 | 3580 | 98.6 | Minus |
| 2R | 25286936 | 2R | 17766461..17766701 | 260..20 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:01 has no hits.
FMO13512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:57 Download gff for
FMO13512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6370-RA | 321..1381 | 2..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:18 Download gff for
FMO13512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OstDelta-RA | 184..1244 | 2..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:38 Download gff for
FMO13512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OstDelta-RA | 184..1244 | 2..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:38 Download gff for
FMO13512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17765590..17766392 | 261..1053 | 98 | <- | Minus |
| 2R | 17766461..17766711 | 9..260 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:18 Download gff for
FMO13512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13653095..13653897 | 261..1053 | 98 | <- | Minus |
| arm_2R | 13653966..13654216 | 9..260 | 98 | | Minus |
