FMO13513.5prime Sequence
1107 bp (1051 high quality bases) assembled on 2013-02-11
> FMO13513.5prime
CAGTCGACATGGACCGGCGAGAGGATGCTCTGCTACAGGCCCTCCAAACG
AACGCCAGCGAGACAGAGCGCTGGGAAGCCTTCAAGCGCGATAATGAGAG
CACCATCCGGAACTTGGACAAGTTCGCAAAGAATCTCAGCGTGGAGGTTA
TGGTGCCCATTGGACGGAAGGCGCTGATGCCCGGCGAGCTGATCCACACC
AACGAGCTTCTGGTGGGTCATTACGAGGGCTACTTCTCCGCCTGCTCCTC
CCACAAGGCCAAGGAGATCTGCCAGTACCGCCTGAAGCTGGCCGAGGAGC
AGCTGAAGAAGCTGGCCGTGGAGAACGATCTGTGGCAGAAAAAACTCCAC
ACTCCATTTGCGGAGGGGGCGGTTCCCAGTGGCGACCAAGTAGAAATTGT
GGAGGATTTCAACGAGGAGTCTCACAACAAGTGGTTGGCGGAGCACAGAA
AGCGAATGCGACAGCAAAAGCAGAAGGAGCGCCTCGAACGGGAGGCGGAA
CCTGTGAAGAAAGATAATGAAGTGCTGCGGAAGCTAGAAGAGCGAGAAAT
GATGGAGGAACTTGGTCTAGATCCAGATAATATCGACGAGGATCAGCTGC
ACGATATGCTGAATCAAGAACCTCTGAAATCCACCAACGAAAGTAGTCCT
AAATCCTTAACCCAGGAAGAGGAGGATGAGCTGTGGAAGAAGCTGGAAGC
CGAGGAGCAGAACGAAGCCGATGAGCTCAGCTCAGAAGCAGAAGAAAGCC
TTAAAACAACGGATAACCTAGTGCGCCAGCTCATGTCCGGAGAAACAGAA
ACTCCATCTTCCAAAAAACGCACTGCAGGAACCAATAGAAACGTGGAAAT
ACAGGATCCCATATCGGAGATGATGGTGATGATGATGATGAGGGTGACCA
GGAGGAGAGGTGCGAACCATACGGGAGCAGATGTCGCTGCTACCCAACGA
AGATCGTGAGCCGTTCCTCAGAGCTCCAACTGCATGTACTTAAAGCCAAA
ATGAGGAGATACAAAGGTCAACTTTTTAGCGATGAGCCTGATCCTTGATG
AATGTGGTGGTCCTGCTAGAGGACGAACTTCACGGACTGTGTATATTTGA
GACGGAC
FMO13513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uri-RA | 2351 | CG11416-RA | 33..1116 | 9..1088 | 5110 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24566041..24566784 | 338..1076 | 3270 | 98.1 | Plus |
| 2R | 25286936 | 2R | 24565682..24565985 | 35..338 | 1520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:53 has no hits.
FMO13513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:36 Download gff for
FMO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 20..1117 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:36 Download gff for
FMO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 25..1122 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:11 Download gff for
FMO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 25..1122 | 1..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:11 Download gff for
FMO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24565686..24565984 | 39..337 | 100 | -> | Plus |
| 2R | 24566041..24566801 | 338..1094 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:36 Download gff for
FMO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20453209..20453507 | 39..337 | 100 | -> | Plus |
| arm_2R | 20453564..20454324 | 338..1094 | 97 | | Plus |
