FMO13516.5prime Sequence
533 bp (533 high quality bases) assembled on 2013-02-11
> FMO13516.5prime
CAGTCGACATGGCTCCACGCAACAAGGAACAGGAACAGGAAGTGCTCAAC
TGGGTGTTCGCCGTGATTGGCGAGAAGGTCCCCAGCGGGCAGTACGAGGA
CATTCTCAAGGACGGCATCTGGCTGTGCAAGCTGGCCAACAAACTGGCCC
CCGGATCGGTGAAGAAGATCCAGGAGCGCGGCACCAACTTCCAACTGATG
GAGAACATCCAGCGTTTCCAGGCAGCGGTCAAGAAGTACGGTGTGCCCGA
GGAGGAGATCTTCCAAACCGCCGATCTTTTCGAGCGTCGCAACATCCCCC
AGGTCACCCTCTCCCTGTACGCCCTTGGACGCATCACGCAAAAGCACCCC
GAGTACACTGGCCCCACACTGGGACCCAAGATGGCCGACAAGAACGAGCG
CAGCTTCACCGAAGAGCAGCTCCGTGCCCACGAGGGTGAGCTCAACCTGC
AGATGGGCTTCAACAAGGGCGCCTCGCAGGCTGGACACGGTGGTATGGGC
AACACCCGCCACATGGCAAGCTTTCTAGACCAT
FMO13516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5023-RA | 789 | CG5023-RA | 81..587 | 9..515 | 2520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20174091..20174411 | 15..335 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 20174491..20174670 | 336..515 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:36:07 has no hits.
FMO13516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:39 Download gff for
FMO13516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 72..590 | 1..520 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:46 Download gff for
FMO13516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 73..591 | 1..520 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:20 Download gff for
FMO13516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 73..591 | 1..520 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:20 Download gff for
FMO13516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20174091..20174411 | 15..335 | 100 | -> | Plus |
| 3R | 20174491..20174674 | 336..520 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:46 Download gff for
FMO13516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15999813..16000133 | 15..335 | 100 | -> | Plus |
| arm_3R | 16000213..16000396 | 336..520 | 98 | | Plus |
