Clone FMO13518 Report

Search the DGRC for FMO13518

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:135
Well:18
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRpL30-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13518.5prime Sequence

359 bp (359 high quality bases) assembled on 2013-02-11

> FMO13518.5prime
CAGTCGACATGGTGGCCGTTAAGAAACAAAAGAAGGCTCTGGAGAGCACC
AACGCCCGTCTGGCGCTGGTGATGAAGTCCGGCAAATACTGCCTGGGCTA
CAAGCAGACCTTGAAGACCCTGCGCCAGGGCAAGGCCAAACTGGTGCTCA
TCGCCAGCAACACGCCCGCCCTGAGGAAGTCCGAGATCGAGTACTACGCT
ATGCTGGCCAAGACTGAAGTCCAGCACTACAGCGGCACCAACATCGAGCT
GGGCACCGCCTGTGGTAAATACTTCCGCGTGTGCACCCTGTCCATCACCG
ATCCTGGAGATTCGGACATCATCCGCTCGCTGGAGACGGCCGCAAGCTTT
CTAGACCAT

FMO13518.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL30-RE 735 CG10652-RE 54..388 7..341 1675 100 Plus
RpL30-RB 477 CG10652-RB 54..388 7..341 1675 100 Plus
RpL30-RC 602 CG10652-RC 123..457 7..341 1675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19008948..19009117 176..7 850 100 Minus
2L 23513712 2L 19008378..19008545 341..174 840 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:36:20 has no hits.

FMO13518.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:41 Download gff for FMO13518.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL30-RC 84..432 1..350 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:53 Download gff for FMO13518.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL30-RC 48..396 1..350 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:28 Download gff for FMO13518.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL30-RC 117..465 1..350 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:28 Download gff for FMO13518.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19008369..19008543 176..350 97 <- Minus
2L 19008949..19009121 1..175 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:53 Download gff for FMO13518.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19008949..19009121 1..175 98   Minus
arm_2L 19008369..19008543 176..350 97 <- Minus