FMO13519.5prime Sequence
1100 bp (1034 high quality bases) assembled on 2013-02-11
> FMO13519.5prime
CAGTCGACATGCCAACCATGACACGGATGCATCGCCACTCCAGTTCCAGT
GCCGTGGTGGAGGAGTCGCGTGGCCGGCGCCGTGGAGTGGGCGTGCCAGG
AGTCGGAGACGCGAACAAGGAGAATTTCGGGGTGCACTTCATGAGCAGTC
CCTTCGGCAATGCCAGTTTGATTGCCCTGCAGGATTTGAGCAACGTGCAC
GGAAAGAGTCCGCAGCGCAGGAGTTTCAGCGAGGGCAGTGGTCCGCGGCA
GGCCACGCCACAATTGGCGGCACTGCGCTGCTTGCCACGCACCACCGGTG
GTGCAGTTGCTCTGGAGGATTCTCAGCTCTCCTCATCGCGAATGGGCGAT
ACCACACTGGACCGCATGCTGGATGCCATCATAGAGTCGGCCAGGAAGGA
GGTGAGGTGTACGAAGACACTGCCAGGCGCCGGCGCCACCACTTCGACCA
CCATTTTGGCGGATAATGCCGAGTGGAGCGAGACCAGTGTCCACGAAATG
GAGGTGCGCACGCCCACCCACTTGAAGCGGCAGCGGGTGGTGCGGCGCAA
GAACCCACACAAGACTACCACCATTAACCAAACGCAAAGTCACCAAGCCA
AGAAGTTGGAGCCACTGCAGTTGGTTCCCAGCACCAAACGCTGCCTGAGC
TTCTCATCCAGTTCCGCCTCGAGTGATTTGGACGAGGATGAGCAGCAGGT
GGCCAAGAGGAGTTCGCTGGCCTCCCCCACCACCACACCTCCCTCCCACT
GCACCACCACCACCAGCAGCATCAGCAGCAGCAGCAGCAGTAATGGTGGT
GCGGACATGGAGGCCAGTCAGCGGGGCAGCATCGATGTGAGCATCGCATT
CGATGCCAAGGAGCAGCAACTTAATGTACATGTGATTCGCTGTCGCGACT
TGCAGCGCTCCCATGGCAGTGGAAACGGCAGCATCACGCCTACGTCAAGG
TGGCCCTGTCCGAGAGCCCAGCCACCCGGATACGTGGCACCTCGTCGGGG
AAGCATGATTTCCGGTACAACGCAACGCCGTCATCGCATCGGGCCGCCCG
TACTTCGAATCACGGATTCAACTTCCCGATTCAGTGGCGAAGGAGAACCG
FMO13519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PsGEF-RI | 6425 | CG43947-RI | 257..1358 | 6..1096 | 5060 | 98 | Plus |
| PsGEF-RH | 9240 | CG43947-RH | 257..1358 | 6..1096 | 5060 | 98 | Plus |
| PsGEF-RG | 9605 | CG43947-RG | 257..1358 | 6..1096 | 5060 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2384853..2385729 | 882..6 | 4385 | 100 | Minus |
| X | 23542271 | X | 2384307..2384516 | 1081..882 | 415 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:36:27 has no hits.
FMO13519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:42 Download gff for
FMO13519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RA | 250..1361 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:58 Download gff for
FMO13519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RG | 250..1361 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:32 Download gff for
FMO13519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RG | 250..1361 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:32 Download gff for
FMO13519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2384853..2385732 | 1..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:58 Download gff for
FMO13519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2278886..2279765 | 1..882 | 99 | | Minus |
