FMO13522.5prime Sequence
1143 bp (1041 high quality bases) assembled on 2013-02-11
> FMO13522.5prime
CAGTCGACATGGACCTGAACACTCTGCTGCAGCGCGCCCAGAACCTGAAC
AATGACGCGAAGGCAGAGTGCGAGCTGCCCGCCGTGGAGCGGACGCTTCA
GCAGGTCCTGCGGGCCACCACGGAGCTCCACTCCCGCGTCACCCAAACCG
GCTGCAAAGAGATCCAGGCTCACATACTGCTGGGCTCCAAGGGCGTGGAC
CTGCCCAAGCTGAACCAGAAGCTGGAGGCGCTGAGTGCCCGGAAAACCTT
CGAGCCGCTAGACGTAAAGGCGGACACGGATGTGCGCACATTCCTGAAGA
ACGAACGCGAGAATGCAATTCTCTCGGTGATCGAGGACACGAAAAAGAAT
ATCAGCGACTCTGCGAACAAGCAGAGGTGGGCCAGTATGAACAAAGTATG
GAACGAGGAGAAGACCCGCCTGCTGGACGCCTTAATTGCGCCGTCACAGA
ACTTTATCGACCTACAACGGCTGCCGGAACCCACCATCGTAAATCCGCTT
TGTCAGCCACGTTCCTGCCTCGATCCGCTGGAACTAGTGTATGCGCAAGA
GTTGCGGCATTACAATGAACTGCTGCTTAAGAGCAGCCATCGACCCAATC
TCGTCCAAAAGTTCGCTCATCTGTCCCAGAGCTTCGGAGATTGCCGGCTT
ACGGACATGTGGACCCTGCTGGCTTGCGTCACCCAAATCAGCGAGCCGCT
GCGCAGTGACCCCATCAAGAGCCGACAGCAAAGACCGGAGTTTGTTACCT
ATGCTAAATCGTACCTAGAACGGCGCTATCGTGTGTTCATGTGCTCCCAA
GTCGGTGGATCCTATGCCAACAACAGCTATCAGTTGGTTGTGGCCTATGT
AAACCACCGGTTCAGAGCACAGCAGACCATCGGACTTGTGGACACCGTCC
GCGAAATACCCTTATGGCCGCTGGTTTACTACGGATTGCGCTGCGGAGCG
GTTAAGTGGCGGTTGAGTTCTGCGCGAGCGGGCAGTAGCACGATGAGTTG
CCCAGCTCGTTGCAGATCGCAATGCGGCGAAACCATTCCAAATAGAAACC
AACTGGCGACTGGAGTACGCCACAAATACGCACCTCCACCGATGCCTATA
AGAGCCCGTTACTGCATCCTTGGGTGCAGTCATTGATACGGAA
FMO13522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-2-RA | 2497 | CG7262-RA | 86..1210 | 9..1121 | 5235 | 98.5 | Plus |
| Nup93-1-RA | 2786 | CG11092-RA | 195..436 | 102..343 | 400 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14897052..14897834 | 1121..351 | 3240 | 96.9 | Minus |
| 3R | 32079331 | 3R | 14897888..14898068 | 350..170 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 14898127..14898287 | 169..9 | 805 | 100 | Minus |
| X | 23542271 | X | 13823152..13823324 | 171..343 | 310 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:49:30 has no hits.
FMO13522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:07 Download gff for
FMO13522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7262-RA | 82..1212 | 9..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:37 Download gff for
FMO13522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-2-RA | 82..1212 | 9..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:51 Download gff for
FMO13522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-2-RA | 86..1216 | 9..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:51 Download gff for
FMO13522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14897045..14897834 | 351..1129 | 97 | <- | Minus |
| 3R | 14897888..14898068 | 170..350 | 100 | <- | Minus |
| 3R | 14898127..14898287 | 9..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:37 Download gff for
FMO13522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10722767..10723556 | 351..1129 | 97 | <- | Minus |
| arm_3R | 10723610..10723790 | 170..350 | 100 | <- | Minus |
| arm_3R | 10723849..10724009 | 9..169 | 100 | | Minus |
