FMO13523.5prime Sequence
281 bp (281 high quality bases) assembled on 2013-02-11
> FMO13523.5prime
CAGTCGACATGTCACAGCTGCGCTCGAAAGTCATTAGCCTCTACAAGCAC
TTGCAGTATTTGGGCCGCGAATATCCCGGCCTGAACGGGCCGCAGAAGTT
CAGGAAGCAGATCCACGATGCCTTCATGAACCACAAGGACGAGCAGGATC
CCAAGAAGATCGTCGCCCTGCTAGCCCAAGGACGTTACTTGGCCAAGGAG
GTGGAGGCCCTGTACTCGCTGAAGAAGTACCGAAGTGTCAAGCAGCGCTA
TAGTTACAATGACGCAAGCTTTCTAGACCAT
FMO13523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6115-RB | 743 | CG6115-RB | 133..387 | 9..263 | 1275 | 100 | Plus |
| CG6115-RA | 727 | CG6115-RA | 133..387 | 9..263 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16887465..16887681 | 263..47 | 1070 | 99.5 | Minus |
| 2L | 23513712 | 2L | 16887793..16887834 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:32 has no hits.
FMO13523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:08 Download gff for
FMO13523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6115-RA | 121..387 | 1..268 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:38 Download gff for
FMO13523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6115-RA | 125..391 | 1..268 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:52 Download gff for
FMO13523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6115-RA | 125..391 | 1..268 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:52 Download gff for
FMO13523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16887461..16887677 | 51..268 | 99 | <- | Minus |
| 2L | 16887793..16887842 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:38 Download gff for
FMO13523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16887461..16887677 | 51..268 | 99 | <- | Minus |
| arm_2L | 16887793..16887842 | 1..50 | 92 | | Minus |
