FMO13524.5prime Sequence
1177 bp (1080 high quality bases) assembled on 2013-02-11
> FMO13524.5prime
CAGTCGACATGGCTGAAGATAGCTTAGCTGATCAGCTGAATGTCCCAGAA
TGGTTAAATGAGCAGTTTGTTACAGATGTTCTGAGATCCCACGAAAAGGA
ACCGGATCTCAGGGTAACCAAATTGGACTTTACTCCAGGAAGTGCCAAAG
GAGATAACTATGCCAGTGTTATAATTCGTGCACGGGTGGAATATATAACC
CAGAAGGGATTCTTTTCCAAGTCGCTCATTATTAAGACGGTTTTGGAAAT
GTTTGCCGGTTCAGCTCTATTTAAAACTGAAATAGGCATGTATAGGAAGG
TCCTGCCGGAGTTTGCGAGAATATTGCGAGAAAACAATGATACTTCCAGG
CTTTACGCAGAATGTATATATTATAGCCTGGAACCGAGTCAAGTTATGAT
CTTTGAGGATCTTGGCGAGATGGATTATGCTATGGTGCGAGATCGTGTGC
TCACACATGGAGAGATATGTGGTGCCTATTCTAAATTGGCCAAATTTCAC
GCACTTAGCATGAAGATCATTAACGAGCGACCAGAATTCGTTAAGGAATT
CAAAGATGGCATTTGTCTAGTTGATATTCCCTATATGAGCTCAGGCATGG
GCCCGTTTAAGGATTTTTTGGGCCGCATTCCTGAGTTGGACAGATACAAG
ACGCACTTTGAGAAGATAGAAGTCCATTTTATAGACCGACTGCGTGATAT
TATGAAAGAGTACCAAACCAATCCTCAGCCTGGCTACTACGTTCTCTGCC
ATGGTGACTACCACACACGTAACATAATGGTTAAACATAATAAGGAATCC
GGAGGCTTCGAGGATTGCATGCTGCTTGATTACCAAGGATGCTATGTTGC
TCCTCTTGCCTTCGACCTTATGTATTCCATTTATATGCTAATGAACCGAG
AACAGCGCATTGGGGAACTAGAGACCTTACTGAACTACTACTTCTCAGTT
CTAAGGAAACACCTAAGAAAGATTGGCTACCAGGGCAAACTGCCCGATCC
TCCTGCGTTCTGGAAGAAATGTATCGCCTTAAAGATTATGAGTTCCTATT
TCTCAGCACCTACTTGCCAATGTTCGGTAGGTCTTAGCTTGAAACCGGAC
TACGAGAAACTGATGATAATACGATTTATGGAGAAGTGTAATCAATCTGG
CAGATGGAGGCTGAATTTGGAAAACCT
FMO13524.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31370-RB | 1408 | CG31370-RB | 98..1212 | 9..1119 | 5385 | 99.3 | Plus |
| CG13659-RA | 1301 | CG13659-RA | 641..935 | 593..887 | 400 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25302561..25303079 | 9..527 | 2595 | 100 | Plus |
| 3R | 32079331 | 3R | 25303141..25303656 | 526..1040 | 2470 | 99 | Plus |
| 3R | 32079331 | 3R | 25301597..25301891 | 593..887 | 395 | 75.6 | Plus |
| 3R | 32079331 | 3R | 25303708..25303755 | 1040..1088 | 195 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:49:35 has no hits.
FMO13524.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 11:00:09 Download gff for
FMO13524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 98..1224 | 9..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:41 Download gff for
FMO13524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 98..1224 | 9..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:54 Download gff for
FMO13524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 98..1224 | 9..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:54 Download gff for
FMO13524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25302561..25303079 | 9..527 | 100 | -> | Plus |
| 3R | 25303143..25303656 | 528..1040 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:41 Download gff for
FMO13524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21128283..21128801 | 9..527 | 100 | -> | Plus |
| arm_3R | 21128865..21129378 | 528..1040 | 99 | -> | Plus |
