FMO13525.5prime Sequence
716 bp (716 high quality bases) assembled on 2013-02-11
> FMO13525.5prime
CAGTCGACATGTCGATGGATCCATCGGTTTCTCTAGAGGATCTGGAGCGA
CGTCGTCGTCGCGCCAGTTCCGCCCGCAAGCAGTCACATACTCCCCAGCC
AGCATCTCACCTGGCGGATTCGGAGGCCATGGCCGTAATCAATGAGATAT
TTAATCCCACGCTGAAGCTGCCGGAGTCCAGTGGCCACTATACGCTGCCC
GAGGAGATGAGGGCCGATGATAATGTGGCGCCCCATGAACTGGACATTGC
CAAGCTGGCGGAGCTGAAGGAAGTCTTCTCGCTCTTCGATACGGACTGCG
ATGGACTGATCTCGAAGGATGATCTACGGTTCACCTACACGGCGCTGGGC
AACGAACCGAACGAACAGCTACTGGAACAGATGATGCAGGAGGCCAAGGA
GCCGCTCGACTATGAAGCCTTCGTTCGGCTGATGAGTCGTCGCACCCAGG
AACTGGATCCCGAGGATGTTTTGTTGGAGGCCTGGAGCAAATGGGATGAC
CATGGCACGGGCAAGATCGACGAACGCAAAATCTATGAAGAGCTGACCAA
CTATGGTGACAAAATGACCCTCAACGAGGCCAAGGAGGCTCTTAGCCACG
CCCCGATGGCCAAGCCCAAGTCCTTGGAGGAGCCGCCCATGATCGATTAC
CCGGCCTTCTGTCGCATGCTAAGTGGAATGCGGAAGCGGAAAGGGGAAGC
AAGCTTTCTAGACCAT
FMO13525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33098-RF | 1182 | CG33098-RF | 165..854 | 9..698 | 3450 | 100 | Plus |
| CG33098-RE | 1169 | CG33098-RE | 152..841 | 9..698 | 3450 | 100 | Plus |
| CG33098-RB | 1049 | CG33098-RB | 32..721 | 9..698 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12387979..12388235 | 273..529 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 12387705..12387928 | 51..274 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 12388298..12388466 | 530..698 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 12387596..12387637 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:36:45 has no hits.
FMO13525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:46 Download gff for
FMO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RB | 24..724 | 1..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:09 Download gff for
FMO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RB | 24..724 | 1..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:43 Download gff for
FMO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RB | 24..724 | 1..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:43 Download gff for
FMO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12387588..12387637 | 1..50 | 94 | -> | Plus |
| 3R | 12387705..12387926 | 51..272 | 100 | -> | Plus |
| 3R | 12387979..12388235 | 273..529 | 100 | -> | Plus |
| 3R | 12388298..12388469 | 530..702 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:09 Download gff for
FMO13525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8213310..8213359 | 1..50 | 94 | -> | Plus |
| arm_3R | 8213427..8213648 | 51..272 | 100 | -> | Plus |
| arm_3R | 8213701..8213957 | 273..529 | 100 | -> | Plus |
| arm_3R | 8214020..8214191 | 530..702 | 98 | | Plus |
