FMO13527.5prime Sequence
671 bp (671 high quality bases) assembled on 2013-02-11
> FMO13527.5prime
CAGTCGACATGGATATTGCCTTGCGTGGCACAAACAGAGCATCGTCAACA
TCAACGACTGGAACTGGTCTGCATCATGCTGTGTCATTGGGCAACATTGA
GGTCTCCACCAAGACCACCTACTCCAGCCACATGGATCGCAGCTACGACT
CCGAGGATGAACACACTGGTCGCCGAAGACTTCGCCATACGCTGTCCACC
GAGTTGCATCCTCACACTTCTGTTTACTCACGCGGAGATATTCGGGAACA
GTACTGCCTCACAGATCGCCAGTTGCACAGCATAGAGCAGCGTCCTAGGC
GAGAACGATTTTTTGGCTGCCTTTCGCGACGCGGTCAAACGCAATCGGGC
AGTTTTTTGGGCGGCTGTGTGGGTCGGCGGGTGCCCTCCGATGAGAATTT
GGCCGCCTATGCTCCATTTGAAAAATATCCACGCTACCAGAACAGCTATA
CGGACACACACGAATTGGAAAGTTCCTATTTTCGCCGTCAACCGGCCTCG
ATTCTGAGTACTGGTAAATCGGGTGAAGCGGATCTGGGTGGACGCTACAC
CTGGATTGGCCAACAGCAGGTGACCAACAACAATCCCGACTACCAATCGG
ACCACAGGTATGGACCGCCTGGCAAGGCGATCGAAAGTCGATACAAAAAC
AGAGCAAGCTTTCTAGACCAT
FMO13527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43707-RD | 8194 | CG43707-RD | 643..1287 | 9..653 | 3225 | 100 | Plus |
| CG43707-RG | 7617 | CG43707-RG | 643..1241 | 9..607 | 2995 | 100 | Plus |
| CG43707-RF | 7922 | CG43707-RF | 643..1241 | 9..607 | 2995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3758980..3759200 | 433..653 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 3758735..3758919 | 249..433 | 925 | 100 | Plus |
| 2L | 23513712 | 2L | 3758537..3758676 | 112..251 | 700 | 100 | Plus |
| 2L | 23513712 | 2L | 3757898..3757957 | 9..68 | 300 | 100 | Plus |
| 2L | 23513712 | 2L | 3758042..3758089 | 66..113 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:37:02 has no hits.
FMO13527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:48 Download gff for
FMO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31959-RB | 268..915 | 9..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:21 Download gff for
FMO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43707-RD | 643..1290 | 9..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:53 Download gff for
FMO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43707-RD | 643..1290 | 9..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:53 Download gff for
FMO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3758981..3759203 | 434..657 | 99 | | Plus |
| 2L | 3758738..3758919 | 252..433 | 100 | -> | Plus |
| 2L | 3757898..3757955 | 9..66 | 100 | -> | Plus |
| 2L | 3758043..3758089 | 67..113 | 100 | -> | Plus |
| 2L | 3758539..3758676 | 114..251 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:21 Download gff for
FMO13527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3757898..3757955 | 9..66 | 100 | -> | Plus |
| arm_2L | 3758043..3758089 | 67..113 | 100 | -> | Plus |
| arm_2L | 3758539..3758676 | 114..251 | 100 | -> | Plus |
| arm_2L | 3758738..3758919 | 252..433 | 100 | -> | Plus |
| arm_2L | 3758981..3759203 | 434..657 | 99 | | Plus |
