FMO13528.5prime Sequence
1138 bp (1044 high quality bases) assembled on 2013-02-11
> FMO13528.5prime
CAGTCGACATGAGCAGCAAGGTGAACTTCGTCTTCGACAGCAATCCTTTG
GGGCTCTATCAAGCCGGTCAGCTTATCTCCGGCACGGCGGAACTGATTAC
GGAGCGCCCCAAGACGATTCGATCGATCTTTATAACCATAAATGGATACG
GCGAGACGCGTTGGCAGGAAAGCGAGGAGCGAGTGGGAGAGGATGGGAAG
ACGACCAAGTCCCTGGTGACCCACACCACCACCGAGGTCTACTACAGCAC
TGACCAGCCGGTTTACGGCCAGGCCGGTGGCTCGCAGCTGGAGTTGCCCA
CCGGCAAGTACGTCTTTCCCTTCCGGGCTACCATTCCGCCCAATGCACCC
ACCTCATTCAATGGTGCTCATGGTCAGATTAAGCACGAGGTTACCCTAAC
CATCGATCGCGCGGTTCGCTACAACAACACATTTAAGCAGTGCTTCACGG
TGATCCTGCCACATGATCTTAATAGGCGGCTCGAGTATAAGGAACCCCTC
CAACGCTTGGAGTCGAAGAGCTTCTGGTGGGGCTCCATTTTCGGTGCCCA
CAAGCCGATGATCATGGACGTGAGCACCTCTTATTCTGCCTACGTCCCCG
GCCAGAAGATTCATTTCCATCTGGTGTTGGACAACCAGTCGGATGTCCAA
TGTATGGACGTGAAGGTGCGTCTGATCAAGAACGTCTCATATAGAGCCAA
CTCATCGGGCGCAAAGGAGCAGTTGAAGGTAACCGAATCTCGGGTGGCGG
ACAAGCACTGCGGTGAGGTGCTGAAGCACAACAAGGCCAAGTTCGATGAG
TTCCTCACGGTGCCGCCAACTACTCCATCCACGCAAAGCGAAAAGGATCC
CATTCGAGTTAGCTACACATTGCGATTCATCGCCAAGACCTTCAAGCTGC
ACGGTGGTGGCGACTTGGTCATGGACTTTCCATAACCATTGGCACAGTGC
CGCTGCTGGGAGTGCTGATGACAGGGCCCGGGGCGGAAAGTCCCAGCCCA
GTGTGCTCTCATCAGGCCTCACCCACTTCAGAGACGTCAGCGATGAGCAA
TTCAGTCAACACCTTAGCAAGAATTTCCGTCTATCCATTGATGGGAGCTG
ACAATGGTCCAACGGAACTAATTTCAGCCTTTATCCAG
FMO13528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14696-RA | 1642 | CG14696-RA | 168..1272 | 9..1096 | 5030 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10882971..10883489 | 1003..490 | 2380 | 99 | Minus |
| 3R | 32079331 | 3R | 10883546..10883914 | 492..124 | 1845 | 100 | Minus |
| 3R | 32079331 | 3R | 10884720..10884834 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:09 has no hits.
FMO13528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:49 Download gff for
FMO13528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14696-RA | 164..1281 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:24 Download gff for
FMO13528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14696-RA | 164..1281 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:57 Download gff for
FMO13528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14696-RA | 164..1281 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:57 Download gff for
FMO13528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10882956..10883487 | 492..1015 | 98 | <- | Minus |
| 3R | 10883547..10883914 | 124..491 | 100 | <- | Minus |
| 3R | 10884720..10884838 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:24 Download gff for
FMO13528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6708678..6709209 | 492..1015 | 98 | <- | Minus |
| arm_3R | 6709269..6709636 | 124..491 | 100 | <- | Minus |
| arm_3R | 6710442..6710560 | 1..123 | 96 | | Minus |
