FMO13531.5prime Sequence
1126 bp (1000 high quality bases) assembled on 2013-02-11
> FMO13531.5prime
CAGTCGACATGTGGAAAATACATAACAAGCTCTTAATCTACATACTCTGG
ATTATGGAAATAAGATTAGTGTCCAGCTTTACATCCGTCATGCTCTGTGG
CCGGATTCCGGGCCTGACCCCGGGCCAGCGAAATATGTGCCGCGAGATGC
CCGACGCACTGATTGCCCTGGGCGAGGGCCACCAATTGGGCGCCCAGGAG
TGCCAGCACCAGTTCCGAGGACACCGCTGGAACTGCTCGGAGGTGTGGCA
GCGCAACGTCTTCGCCCATGTCATACCCACAGCTTCTCGTGAGGCTGCCT
ACACCTATGCGATAGCAAGTGCCGGAGCGGCGTACGCGGTGACCGCCGCC
TGTGCCCGCGGCAACATCTCCACCTGCGGCTGTGATGTGCGGCACAAAGC
CACGCCCACTGGCGGCGGTACGCCCGACGAGCCCTGGAAGTGGGGCGGCT
GCTCGGCGGACGTGGACTTTGGGATGCGGTATGCGCGCAGATTCATGGAT
GCCCGCGAATTGGAGCGCGACTCCCGCACGCTGATGAACCTGCACAATAA
CCGAGCAGGGAGAACGCTGGTCAAGAAGATGCTGCGCACGGACTGCAAGT
GCCATGGCGTCAGTGGCTCCTGCGTGATGAAGACCTGCTGGAAGAGCCTG
CCGCCCTTTCGACTGGTTGGCGATAGACTCATGCTGAAGTATCAAAAAGC
CAAAACTGTTCAAGCCGTCAAAGGCAAACGTGGACTGAGATTAGTATTAA
GCAGAAAGAAGCATGCCGGCACCGCTCGTGCCCAGAAACCGGTCCTCGAT
TGGCCGAAGCGCATGGAGCTGATCTACCTGGAGGCGTCGCCCAACTACTG
CGAGCGAAGTCTGCAGACGGGCAGCCAGGGCACCTCAGTCGGACCTGCCA
GCGGACCGGCCACGGCCCCAGAGCTGCGATCTGCTCTGCTGTGGGGCGTG
GCCACACACGCAGCACATTCGAGACACGCAGTGCCGCTGCCAATTCCGCT
GTTGCTGCGAGTCAGTTGTGACGAGTGCGACGAGAAGCTACGAGGGTCAC
CCTGTAAGCAGCTTCTAGAACATCGTTGGCGCCGGGCCAGGTAGTGGTCT
ATCATATCCTATACTATCTATATTCC
FMO13531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wnt2-RA | 2240 | CG1916-RA | 1028..2074 | 4..1045 | 4970 | 98.8 | Plus |
| Wnt2-RB | 2235 | CG1916-RB | 1028..2069 | 4..1045 | 4885 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9501970..9502256 | 280..566 | 1435 | 100 | Plus |
| 2R | 25286936 | 2R | 9501369..9501588 | 63..282 | 1100 | 100 | Plus |
| 2R | 25286936 | 2R | 9502723..9503013 | 751..1035 | 1055 | 95.5 | Plus |
| 2R | 25286936 | 2R | 9502321..9502509 | 566..754 | 945 | 100 | Plus |
| 2R | 25286936 | 2R | 9495193..9495253 | 4..64 | 290 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:54 has no hits.
FMO13531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:54 Download gff for
FMO13531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wnt2-RA | 1023..2084 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:13 Download gff for
FMO13531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wnt2-RA | 1026..2087 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:32 Download gff for
FMO13531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wnt2-RA | 1026..2087 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:32 Download gff for
FMO13531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9495191..9495253 | 1..64 | 96 | -> | Plus |
| 2R | 9501371..9501588 | 65..282 | 100 | -> | Plus |
| 2R | 9501973..9502256 | 283..566 | 100 | -> | Plus |
| 2R | 9502322..9502509 | 567..754 | 100 | -> | Plus |
| 2R | 9502727..9503035 | 755..1057 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:13 Download gff for
FMO13531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5382696..5382758 | 1..64 | 96 | -> | Plus |
| arm_2R | 5388876..5389093 | 65..282 | 100 | -> | Plus |
| arm_2R | 5389478..5389761 | 283..566 | 100 | -> | Plus |
| arm_2R | 5389827..5390014 | 567..754 | 100 | -> | Plus |
| arm_2R | 5390232..5390540 | 755..1057 | 95 | | Plus |
