FMO13601.5prime Sequence
1070 bp (964 high quality bases) assembled on 2013-08-23
> FMO13601.5prime
TCAGTCGACATGTGTTGCCAATCAAGTGGCCAGTGGAAATTTCCTGCGCA
GCAGCCTCGAAAATCTTTGGCGTCAAGGCGGCGCCACACGGGATTTCGCC
CAAGCACCCAGCTCCTGATCCTCATCGCAGTCCTGCTGGCCCTGCTGCAA
GGACGAACAGTCGACGCCGGGGCGGGAGATAGTCTATCGGGCGTCCGGCA
ATCCTGCTCGAATGAGGGAGAAGAAGTCCAACTGAAGAACCAGCCGCAGA
TTTTCACCTGCTTCAAGTGCGAATGCCAGAACGGATTCGTGAATTGCCGA
GATACTTGTCCACCAGTCAATGACTGTTACATTCTGGATAAGTCGAATGG
AACTTGCTGCCGCAGGTGCAAGGGTTGCTCTTTTCGTGGCATGTCGTATG
AGAGTGGCTCGGAGTGGAACGATCCGGAGGATCCCTGCAAGACGTACAAG
TGCGTGGCCACCGTGGTCACCGAGACGATCCAGAAGTGCTACTCGCAGTG
CGACAACAACCAGTTACAGCCACCACGACCGGGCGAATGCTGTCCCACCT
GTCAGGGTTGCAAGATCAACGGACAGACGGTGGCCGAGGGCCACGAGGTG
GACGCCTCCATTGACGACCGCTGTCTGGTCTGCCAGTGCCGCGGGACGCA
GTTGACCTGTTCCAAGAAGACATGCCCGGTGCTACCGTGTCCCATGTCCA
AGCAGATCAAGCGTCCGGATGAGTGCTGTCCGCGCTGCCCGCAGAACCAC
AGTTTTCTACCTGTTCCAGGCAAATGCCTCTTCAACAAAAGCGTTTATCC
GGAGAAGACGCAGTTTATGCCGGGACAGGTGTACGAACTGCACCTGCCTG
AACGGCACCTCCGTGTGCCAGCGACCCACCTGCCCGATCTTGGAGTGCGC
TCCCGAATTCCAGAGCCAGATGGCTGCTGTTCCCCGCTGGTGCGGTGGCC
GAAGTGCGGAGCGAGTTGCAGCTTGGATGGGATTGGTGTACCACAAACAA
CGAGACGTGGGGACATGGGGGCGTGGTCCCCACCTGCCGGTGCAATGAGT
GGAAACATCTCGGTGGTGGC
FMO13601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cv-2-RA | 4329 | CG15671-RA | 1083..2128 | 10..1065 | 4895 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21357873..21358087 | 770..556 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 21358815..21359000 | 558..373 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 21366662..21366843 | 191..10 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 21357252..21357511 | 1025..760 | 875 | 95.5 | Minus |
| 2R | 25286936 | 2R | 21359089..21359187 | 375..277 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 21363699..21363788 | 279..190 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:21 has no hits.
FMO13601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:18 Download gff for
FMO13601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-2-RA | 1077..2131 | 4..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:40 Download gff for
FMO13601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-2-RA | 1077..2131 | 4..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:40 Download gff for
FMO13601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21366663..21366849 | 4..190 | 98 | | Minus |
| 2R | 21357212..21357501 | 770..1070 | 93 | <- | Minus |
| 2R | 21357874..21358086 | 557..769 | 100 | <- | Minus |
| 2R | 21358817..21358999 | 374..556 | 100 | <- | Minus |
| 2R | 21359091..21359184 | 280..373 | 100 | <- | Minus |
| 2R | 21363699..21363787 | 191..279 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:18 Download gff for
FMO13601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17251204..17251292 | 191..279 | 100 | <- | Minus |
| arm_2R | 17244717..17245006 | 770..1070 | 93 | <- | Minus |
| arm_2R | 17254168..17254354 | 4..190 | 98 | | Minus |
| arm_2R | 17245379..17245591 | 557..769 | 100 | <- | Minus |
| arm_2R | 17246322..17246504 | 374..556 | 100 | <- | Minus |
| arm_2R | 17246596..17246689 | 280..373 | 100 | <- | Minus |
