FMO13603.5prime Sequence
1067 bp (942 high quality bases) assembled on 2013-08-23
> FMO13603.5prime
TCAGTCGACATGAGTAACTACCATCCGCATTCGCATCCGCACGCGCTCTC
GCATCCGCATCCGCAGCAGGTCCATAATCAGCTGCAGAATCCCCACCAGA
ACCAGTTGCCGCCCCCGCAACGCCATAACCATGCCGCGCCCACTGCAGCA
GCCTCCGCCTCCGGAGCGCCATCATCATCAGCATCGGCATCGGCATCAGC
ATCTATCCTGGTGGCCCATCCTCCCCAGCCGCTCATCAGCAACTCGCTGG
CCATCCGGCAGGAGATCCAGCGATTCGAGAGCGTCCACCCATCCATCTAT
GCCATATACGAACTGATCGATCTGCTGCCCATGGCCGATGCCCAGATAGC
CCAGTCCATTCGGGACCATGTGGTCTGCATTGAAGATTCGTTTGTGAACA
GTCAGGAATGGACAATTTCTCGTTCGGTGCCAGATCTGAGGCTGGGAATC
GTCGGTTCCCTGAACTCCGGCAAGTCAGCCCTGGTGCATCGCTATCTCAC
CGGATCCTACATGCAGGAGGAGTCGCCCGAAGGTGGTCGGTTCAAAAAGG
AGGTCTTCATCGATGGCCAGAGCTACTTGCTGCTCATTCGCGACGAGGGT
GGAGCTCCCGAAATGCAGTTCGCTGGCTGGGTGGATGCGGTAATCTTTGT
GTTCAGCCTGGAGAACGAGGGCAGCTTCAATACCGTCTATAACTACTATA
CGAAAATGGCGCATTTTCGTAATGGCCAGGAAATACCCATGATATTGGTC
GGAACGCAAGACGCCATCAGCGAGCGCAATCCTCGCGTGATTGACGACAC
CCGTGCCAGGAAATTGGCCAGCGATCTGAAGCGTTGCTCCTACTACGAGA
CCTGCGCCACCTACGGCCTGAATGTGGAGCGTGTCTTTCAGATGCCTGTC
AAAAGATCCTCTCGCAGCGCCTGCTTTGCACCACAGGTGCAACCGGGAGA
CCACGACTCCGCCAGGCATCGCCTGGGAATTGGCTCCTACAGCGCCCACC
AATGTAGCAACGTGGCAGCACCACTACCACTGCGAATGATGTCGATTCGC
TCAGGCGGAACGAAACC
FMO13603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenG1A-RB | 4444 | CG31811-RB | 493..1554 | 9..1059 | 4840 | 97.9 | Plus |
| CenG1A-RA | 3869 | CG31811-RA | 749..1435 | 384..1059 | 2965 | 96.8 | Plus |
| CenG1A-RC | 3516 | CG31811-RC | 172..626 | 616..1059 | 1805 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13836056..13836432 | 9..385 | 1885 | 100 | Plus |
| 2L | 23513712 | 2L | 13891298..13891532 | 384..618 | 1175 | 100 | Plus |
| 2L | 23513712 | 2L | 13895026..13895170 | 616..760 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 13895253..13895385 | 759..891 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:36:27 has no hits.
FMO13603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:21 Download gff for
FMO13603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RB | 490..1554 | 6..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:44 Download gff for
FMO13603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RB | 490..1554 | 6..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:44 Download gff for
FMO13603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13836053..13836432 | 6..385 | 99 | -> | Plus |
| 2L | 13891300..13891532 | 386..618 | 100 | -> | Plus |
| 2L | 13895029..13895170 | 619..760 | 100 | -> | Plus |
| 2L | 13895255..13895389 | 761..894 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:21 Download gff for
FMO13603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13836053..13836432 | 6..385 | 99 | -> | Plus |
| arm_2L | 13891300..13891532 | 386..618 | 100 | -> | Plus |
| arm_2L | 13895029..13895170 | 619..760 | 100 | -> | Plus |
| arm_2L | 13895255..13895389 | 761..894 | 99 | -> | Plus |
