FMO13605.5prime Sequence
402 bp (287 high quality bases) assembled on 2013-08-23
> FMO13605.5prime
TCAGTCGACATGGATTTGCGCGTGAGCTTTAGTGACAAGCTGAAACTGGG
CGCCAAGATTATTGGCCATAAGGTGGTTCAGTACAAGCTGGGCACGGGTC
AGACCAAGGAGCTGGCCACCAAATATGGCCAGCTGAAGGGTCAGCAGCGC
AGGACACTCTACGATGGCGAACCCTACTACTCCTTCGAGGGCATTCCCTT
TGCCCAGCCGCCCGTGGGTGAGCTGCGTTTTCGCGCACCCCAACCCCGAG
CTCGTGGCAGGCGTCAGGGATTGCACCTATGCCAGGGAGAACCTATGCAA
GGACTCCATTACTACGCTGCCGAAGGATCCGAGGATTGCCCCACCCATGT
TACCCCAGAGCTCGAGTCCCGAACATTCCCGTATGGTCTGATATCGTGGG
GC
FMO13605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6018-RA | 1955 | CG6018-RA | 115..451 | 10..340 | 1535 | 98.2 | Plus |
| alpha-Est1-RA | 2123 | CG1031-RA | 216..419 | 39..242 | 225 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22550320..22550609 | 57..340 | 1155 | 97.2 | Plus |
| 2R | 25286936 | 2R | 22550208..22550255 | 10..57 | 240 | 100 | Plus |
| 3R | 32079331 | 3R | 7548051..7548142 | 242..151 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:33 has no hits.
FMO13605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:24 Download gff for
FMO13605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6018-RA | 109..468 | 1..353 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:48 Download gff for
FMO13605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6018-RA | 109..468 | 1..353 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:48 Download gff for
FMO13605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22550202..22550254 | 1..56 | 91 | -> | Plus |
| 2R | 22550320..22550626 | 57..353 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:24 Download gff for
FMO13605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18437707..18437759 | 1..56 | 91 | -> | Plus |
| arm_2R | 18437825..18438131 | 57..353 | 96 | | Plus |
