FMO13606.5prime Sequence
847 bp (541 high quality bases) assembled on 2013-08-23
> FMO13606.5prime
TCAGTCGACATGGCCAAGTTGAAGAAACTGCATATGAGCTCCAACCTTGA
TGACCTGGAGAAGATGTCCATCATTCCGGATCTGCGCAGCAAGGGCATGA
AAATCCTACTGAACACCGCCCGCAAACTGTACATGACCGCCGAGGAGTAC
AGACTGGATGGCGACGAGGAACTGGCCTACATCACCTACATGAAGTACTT
CAATATGCTGACCGCAATTCACAAAAAATCCGATTACCCCAGCCACAAGA
CGACGGTGCGCCAGATGCTGGGCGACACCGAGTCGAATCGCCGCATTATG
GACACGCTGGAGGAGATTATCAACTCTCTGCGGCATCGTTATGCTCAGCA
GCACCAAGCGCCGGAAACCAAATTGCTCCCGACCTGGTTAGCAAATGGGC
GTGCGGGGTGTGGACTCGCCGATAACACAGCCAACGCAGTACGCCCGACT
TGGGCTGAATAACCTGTCAGGATCTGTATCGGCGCATGCAGGAGAAATCG
GTCCTAGTTATGGACTGTCGCCCAAGCGCCGACTACGAGGCCCCCCCACC
TCACGTACTACTGTGCATTTAATGTGCCCCGAGGAGTTAATAACCGCCAG
GAATGTCGGCTGGCAGATTGCAGGCCTCGTCTTAGCAGCAGCGCCAAGGC
GTCGTGGCATCGCGTTCCGTCAAGGATTCGTTGTTTCTTATGGACTGGAC
ACCAAGATGCCCACCGGCGACCACACAGCCATTTCAACCTTCTGACATCC
TGAGACTGGATCCGGATGTGACGTATCGCGCACCCATTCAATTGTCGAGG
CGTATGATTACTTCATATGATGTACCCGACCCATGCACTATTCCAGT
FMO13606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubpy-RA | 3204 | CG5798-RA | 150..991 | 10..844 | 3550 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21134569..21135051 | 105..594 | 2090 | 98 | Plus |
| 3R | 32079331 | 3R | 21134411..21134505 | 10..104 | 475 | 100 | Plus |
| 3R | 32079331 | 3R | 21135116..21135258 | 601..739 | 390 | 94.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:36:36 has no hits.
FMO13606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:26 Download gff for
FMO13606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RA | 150..995 | 10..847 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:49 Download gff for
FMO13606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RA | 150..995 | 10..847 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:49 Download gff for
FMO13606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21135117..21135279 | 602..756 | 92 | -> | Plus |
| 3R | 21134411..21134505 | 10..104 | 100 | -> | Plus |
| 3R | 21134569..21135057 | 105..601 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:26 Download gff for
FMO13606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16960133..16960227 | 10..104 | 100 | -> | Plus |
| arm_3R | 16960291..16960779 | 105..601 | 97 | -> | Plus |
| arm_3R | 16960839..16961001 | 602..756 | 92 | -> | Plus |
