FMO13608.5prime Sequence
716 bp (459 high quality bases) assembled on 2013-08-23
> FMO13608.5prime
TCAGTCGACATGTCGGACATTGAGGATGTTTTCGGTGGCTCCGCCGAGGA
GACCAAGCCCGAACCCGATGCCCAGAGCAAAACCAGCGTGGTCACCGAGC
ACACCGAGGAGGTGATTCCCGGCGAGACCGAGAAAATGGTAACGGAGACC
ATCGATGAGGATGGCGATGTCGTGGAGGAAACCACCGAAGTTACCCGCAA
AACGGTGAAGCGCACCATGAAGATCACTGAGACTTCTGCCACCACAAAGA
CAACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAG
TACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGA
GATAACCATACTGGCCAAGAAGTGATCCCGATGACAACTTCCTGCCGCCA
GACCAGCGCATAGCTATGAGTGCACCAGGAAGCACGGGCCTCTCATCGCA
GCAGCTGATCGAGCACATCATAGCAGCCATCGAGACCCGGATCAGCCGGA
GTCGAGCGTTCGTCAGGCAGGTCGTGGAAGATTGGGTCCACCGCAGGGAT
GCCTGCGACATCGAGGCGAGAAAATCGCATTGACATGGGCGAGGAGTACG
ACACGCCTTACGATGCACGCAGAAGAGACATCGATCTGGCGCATCTCCGC
TCACCGATGATGATCAGACAGTACACGCCTCTGCTCACAGGTAGCCGGGC
TGGATGGATGCATACG
FMO13608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RI | 3000 | CG1539-RI | 544..1208 | 10..640 | 2450 | 94.4 | Plus |
| tmod-RN | 2699 | CG1539-RN | 337..1001 | 10..640 | 2450 | 94.4 | Plus |
| tmod-RM | 2299 | CG1539-RM | 223..887 | 10..640 | 2450 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30533286..30533507 | 10..231 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 30571807..30571945 | 230..368 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 30572023..30572116 | 383..470 | 190 | 92.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:36:42 has no hits.
FMO13608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:29 Download gff for
FMO13608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RM | 214..901 | 1..651 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:52 Download gff for
FMO13608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RM | 214..901 | 1..651 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:52 Download gff for
FMO13608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30533277..30533507 | 1..231 | 98 | -> | Plus |
| 3R | 30571809..30571961 | 232..382 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:29 Download gff for
FMO13608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26358999..26359229 | 1..231 | 98 | -> | Plus |
| arm_3R | 26397531..26397683 | 232..382 | 98 | -> | Plus |
