FMO13614.5prime Sequence
823 bp (823 high quality bases) assembled on 2013-08-23
> FMO13614.5prime
TCAGTCGACATGGAAAGCAACGCATTTGGCAGCAGCCATTTGCCGTCCCA
AGCGCTCGTTGTCCTCTCGGAAGCCGCTTCCGGTCTGCACGAGGCTCTAC
GTGGACAACGTCCGTTTCCATCGAGAGTAATCCCTTTCGATTTCCCCCTC
TTGCAGCTACCCGACGCCAAAGATCTGCACAATATGTCACTAGTCGGCAA
CTACTTCAATCCGCACCTGCTGCTCAACCACGGGATGCTGGTGGCCAACG
GAGCGGCGGCGGCAGCGGCGGCGGCGGGAGCGGGACCGGCCAGCTACTTT
GCCAGTGACCGCTCGCCGCTGGGCAAGCCGTCGGTGCTGTCCAACTTCTC
GCTGCCGTCGGCCTTCTCGCCGCCCAAGTACATCGGCATATCCCTGGATC
AGAATCTGTTCAATGGCAGCGAATCATTTCGCACGGATTCGGCCAGCCCC
ACATGCACATCGCACGAATCCATGGAGGGATCACAGGATTACGATGCCGT
TGAAAAGGGTGAAAGTCCGCGCAGCAATAATTCTCAGGATCCCAGGGATT
TGAGACATCTGCATAATGCGGGGAAGAGCCACCAGGCACTGGCCACTTCC
TCGTCGGCGTCCAGCTCCTCGTCCTCCTCCTGCTCCACCAGCAATCCCGC
CATCAGCACGGCGACCAGCAGCGTTGCCGTTTCGATGGCCAGCCACCTGG
CCGCCTCCTCGCCGCACCATCACCCCCACACGCACGCCCACTCGCACCCG
CATCCGTTGGCCCATCCGCACGCCATAGCCATCACCACGTGGGCACCATG
TGGGGGCACCTCCGGGTGTCCAC
FMO13614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tey-RB | 3200 | CG8780-RB | 270..1084 | 10..823 | 4005 | 99.6 | Plus |
| tey-RA | 2827 | CG8780-RA | 270..1084 | 10..823 | 4005 | 99.6 | Plus |
| tey-RD | 2646 | CG8780-RD | 230..899 | 155..823 | 3280 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19657096..19657371 | 402..127 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 19653655..19653915 | 815..557 | 1205 | 99.2 | Minus |
| 3L | 28110227 | 3L | 19656810..19656966 | 556..400 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 19663275..19663395 | 130..10 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:54 has no hits.
FMO13614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:37 Download gff for
FMO13614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tey-RA | 270..1084 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:01 Download gff for
FMO13614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tey-RA | 270..1084 | 10..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:01 Download gff for
FMO13614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19653648..19653915 | 557..823 | 98 | <- | Minus |
| 3L | 19656810..19656963 | 403..556 | 100 | <- | Minus |
| 3L | 19657096..19657371 | 127..402 | 100 | <- | Minus |
| 3L | 19663279..19663395 | 10..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:37 Download gff for
FMO13614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19646748..19647015 | 557..823 | 98 | <- | Minus |
| arm_3L | 19649910..19650063 | 403..556 | 100 | <- | Minus |
| arm_3L | 19650196..19650471 | 127..402 | 100 | <- | Minus |
| arm_3L | 19656379..19656495 | 10..126 | 100 | | Minus |
