FMO13616.5prime Sequence
1082 bp (965 high quality bases) assembled on 2013-08-23
> FMO13616.5prime
TCAGTCGACATGCCGCTCAATGCCCAGTTAAAGATTGCTCAATCAGTGAA
CAAAGTGACATACGCGAAAGTCAGTGACTCAAACTGTTGTGCTAAAAAGC
AACAAAAATACTCTATTGCCGACTTTAGCCAGGCCAAAAGGCAGGCAGGC
AGCATGTGTGCCACGGGGAAAGGTAAGCACAGGCTCTGTAGCCTCAGTGC
CCTGCTCCTCGTCCTGGTCGCCCAAACAGTGCACGTGGAATACGCCCGGG
CGGATTATGAGAACACCTGGAATCTATATTACGAGCCGCCCTGCTGCACG
GGCTCATCTGCTGCCCATCATCTGCGCCACCACAAAGAACATGTGCAGGA
CTTCAGTTGCGGGCCGCTGCACTACAAGACTTTCTACATGGATGAGCGCA
ACAATGCGCTATATGTGGGCGCCATGGATCGCATATTTCGGCTCAATCTG
CGCAACATCAGCCAATCGATTTGTGAGCGCGATGTCCTCATCCTGGAGCC
CACCGGATCGGATATCCTGAATTGTGTTTCCAAGGGTAAACGGGAGGTGG
AATGCCGAAATCACATAAGGGTTATCCAGCCGATGAACTTCAATGGCCAG
AAGCTATATGTTTGCGGGACCAACGCCCACAATCCCAAGGATTACGTAAT
AAACGCAAACTTAACACATTTACCCAGATCCCAGTACGTGCCCGGCATTG
GCCTGGCATTGGCAAGTGTCCCTACGATCCTGCTGACAACTCAACCGCCG
TCTATGTGGAGAACGGAAATCCCTTCGGCCTGCCCGCCCTGTACGCCGGC
ACAAATGCCGAGTTCACCAAAGCGGATTCCGTCATATTCCGCTCGGACCT
GTACACCTGACGAATGGACGCAAGGAGGCCAACTTCAAGAGAACCGTGAA
GTACGACTCCAGCTGCTGGACAGGCCCACCTTCGTCGGCTCCTTTGAAAT
AGTGAATTTGTGTACTTCTTCTTCCGCGAACATGCCGGTGAGTAAATAAA
ATTGGCGGAAAAACCGTTCTACTTTCCGAATGCTCCTTGTTCCAAAACAA
ACCGCGGGTGGGAAATTATTGATTCAGCCCGA
FMO13616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2b-RA | 3718 | CG33960-RA | 172..1186 | 10..1023 | 4810 | 98.6 | Plus |
| Sema-2b-RC | 5034 | CG33960-RC | 493..1507 | 10..1023 | 4810 | 98.6 | Plus |
| Sema-2b-RD | 4174 | CG33960-RD | 493..1510 | 10..1023 | 4770 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16399094..16399421 | 10..337 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 16423451..16423588 | 655..791 | 640 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16424037..16424171 | 791..923 | 575 | 98.5 | Plus |
| 2R | 25286936 | 2R | 16423015..16423125 | 545..655 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 16420279..16420369 | 336..426 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 16422678..16422751 | 476..549 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 16421677..16421732 | 422..477 | 265 | 98.2 | Plus |
| 2R | 25286936 | 2R | 16424296..16424373 | 924..1000 | 265 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:01 has no hits.
FMO13616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:40 Download gff for
FMO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2b-RC | 486..1512 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:06 Download gff for
FMO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2b-RC | 486..1512 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:06 Download gff for
FMO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16423017..16423124 | 547..654 | 100 | -> | Plus |
| 2R | 16423451..16423588 | 655..791 | 99 | -> | Plus |
| 2R | 16424038..16424170 | 792..922 | 98 | -> | Plus |
| 2R | 16399087..16399421 | 1..337 | 98 | -> | Plus |
| 2R | 16420281..16420368 | 338..425 | 100 | -> | Plus |
| 2R | 16421681..16421732 | 426..477 | 100 | -> | Plus |
| 2R | 16422680..16422748 | 478..546 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:40 Download gff for
FMO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12286592..12286926 | 1..337 | 98 | -> | Plus |
| arm_2R | 12307786..12307873 | 338..425 | 100 | -> | Plus |
| arm_2R | 12309186..12309237 | 426..477 | 100 | -> | Plus |
| arm_2R | 12310185..12310253 | 478..546 | 100 | -> | Plus |
| arm_2R | 12310522..12310629 | 547..654 | 100 | -> | Plus |
| arm_2R | 12310956..12311093 | 655..791 | 99 | -> | Plus |
| arm_2R | 12311543..12311675 | 792..922 | 98 | -> | Plus |
