FMO13618.5prime Sequence
830 bp (479 high quality bases) assembled on 2013-08-23
> FMO13618.5prime
TCAGTCGACATGGACTTCAAGGAATACCGCCAAAGGGGCAAGGAGATGGT
CGACTATATTGCAGACTATTTGGAGAACATCCGGGAACGCCGAGTTTTTC
CGGATGTCAGTCCGGGCTATATGCGCCAGTTACTGCCGGAGTCCGCTCCG
ATCGAAGGTGAACCGTGGCCGAAAATATTCTCGGATGTGGAGCGAATCGT
GATGCCGGGCATAACCCACTGGCAATCGCCCCACATGCACGCCTACTTTC
CGGCCCTCAACTCCATGCCTTCCCTACTGGGCGACATGCTGGCGGATGCG
ATTAACTGCCTGGGATTCACCTGGGCGAGCTCGCCGGCCTGCACCGAGCT
GGAAATCATAGTGATGAACTGGCTGGGCAAAATGATCGGTCTGCCGGATG
CCTTTCCCCCCCTGAGCTCCCAAAGTCAGGGGCGGGTGGGAGTGCTGCAG
ACCCCTGCCCAGTGAAGCTACTCTAGTTTGTCTGCTGGCGGGACGGACCT
CGGGCTATTCAGCGATTCCATGAGCGACATCCTGGCCTATCAGGATGCGG
AGATCAACGCCCGGCTGGTGGCCTACTGCTCCGATCAGGCGCACTCCAGT
GTGGAGAAGGCGGCGCTCATTGGACTCGTGAGGATGCGTTACATCGAGGC
GGATGATGACCTGGCGATGCGCGGCAACTGTTGCGCGAGGCCATCGAGGA
TGACATTAAGCAGGGCCTGATCCCTCTGGGTCTGCGCACACTCGGGACAC
GCAGCTGCAGCTCGATACTGAGGAGATGCATCGTTGTGCGGAGCACCACT
GTGCTCCACGTGACGCGCGTACGCGCAGCG
FMO13618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hdc-RD | 3733 | CG3454-RD | 691..1518 | 9..824 | 3520 | 96.4 | Plus |
| Hdc-RC | 3313 | CG3454-RC | 258..1085 | 9..824 | 3520 | 96.4 | Plus |
| Hdc-RB | 3300 | CG3454-RB | 258..1085 | 9..824 | 3520 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10241670..10242250 | 37..623 | 2585 | 97.6 | Plus |
| 2R | 25286936 | 2R | 10242470..10242573 | 622..724 | 455 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:07 has no hits.
FMO13618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:43 Download gff for
FMO13618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdc-RA | 228..1063 | 9..830 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:10 Download gff for
FMO13618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdc-RB | 258..1093 | 9..830 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:10 Download gff for
FMO13618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10241096..10241124 | 9..37 | 100 | -> | Plus |
| 2R | 10241671..10242249 | 38..622 | 98 | -> | Plus |
| 2R | 10242471..10242580 | 623..729 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:43 Download gff for
FMO13618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6128601..6128629 | 9..37 | 100 | -> | Plus |
| arm_2R | 6129176..6129754 | 38..622 | 98 | -> | Plus |
| arm_2R | 6129976..6130085 | 623..729 | 96 | -> | Plus |
