FMO13621.5prime Sequence
913 bp (742 high quality bases) assembled on 2013-08-23
> FMO13621.5prime
TCAGTCGACATGCCTTCTTCATTGTGTGAAGCTCTCACAAATTCTTCAAT
CAGTTTCGATTATCAAAAAGAAGATGATTGGATTACGAGTGGAAAGCTTG
GTTCGCGAGAAGCAGTTTTGGTTTTCAGAACGAATATTCTTAATCCGAAA
ATCCGGAAAACATTGTCTGAGAAGTCCTCTGCACAAGTGTTAACGGACAC
GAAGGATAATGAGGAGAAGCCCGTTCAAAGCCCACAAAAACTGGCGGAAG
AAGAACCCACTTCTTCGGAACCGAGTAGCAAGGAAGCTCTAAGCGGTTCA
ACGCAACAAAAGATATTTTTATTGAAAAAACCGCAACAATGTGATAAATC
GGATAAATTAACTTTTTCTAGCCCTTTTAAGAAGATACTTAACCGATATT
CCTCGAGTGATACGTCCATTTCAAGTGAAGGTGAAGAGCCTGCAAATAGT
AGTGAAAACAAATCGCGTGTACTTAAAACCAGTCAGATGCCATTAATATT
AAACTAGCTACCGACTTATCGAATGAGAGTGGATACGAATCCATAGCACC
TGCCAAACAATTTCAAATACTGAAGTATCGAAGAGATCAGGAGGAGACGA
GCGAGGACGATGCCGAGTGTGGGATAAACATGCCTGCCTCAAACTCAAAA
TTACCTACAATTCCATCAAACGAAACCAAGTGCTCGAAGCTCTTATGTCC
ATGGCCTACTGAAGTCAGGTGAAATAAAACTTTATTACTCTGGACGGTGT
CATATGAATAGATATTGTAGAATTGCGCCGTATCGAGGGTTATCATTTCC
CAGTCTACGAATGACGACGGATCGACTATATAACTCGACGCTTGCACATC
TCGGGGATGAACATTTTGATATGGGCCAACATCGTCTGGCATCGATCCCA
GATTGTAATCCAC
FMO13621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31108-RB | 3273 | CG31108-RB | 362..1276 | 3..872 | 3460 | 94.6 | Plus |
| CG31108-RA | 3463 | CG31108-RA | 362..1276 | 3..872 | 3460 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25115410..25116040 | 672..48 | 2855 | 99 | Minus |
| 3R | 32079331 | 3R | 25116112..25116156 | 47..3 | 195 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:37:13 has no hits.
FMO13621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:47 Download gff for
FMO13621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31108-RA | 360..1138 | 1..758 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:13 Download gff for
FMO13621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31108-RA | 360..1138 | 1..758 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:13 Download gff for
FMO13621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25115309..25116040 | 48..758 | 97 | <- | Minus |
| 3R | 25116112..25116156 | 1..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:47 Download gff for
FMO13621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20941031..20941762 | 48..758 | 97 | <- | Minus |
| arm_3R | 20941834..20941878 | 1..47 | 91 | | Minus |
