FMO13622.5prime Sequence
620 bp (393 high quality bases) assembled on 2013-08-23
> FMO13622.5prime
TCAGTCGACATGAGCTGTTTCTTCCGCTTATTTGCCAGCCCCGGCAAAAT
GGACGGCAATCCACTTTCGGAAATAGAAGAAATTGTCAAGACGACAACGG
AGCAGCACGAGTCCAACAGTCGCGTGGATGGAGGCGGAGGTGTGGAAAAT
GCCAGCACCAACGGCCATGGTCGATCCCACGACAACAATGATGAGAGCCA
CACCGCTGTGTCTGACAAGGCTGCAGCCCTCAAAAAGCGGCAATGCGTCT
TTGCGGAGCTGATGTCCACGGAGGAGGCATATGTACAGGATCTGCATGAG
ATCGTCAATGGTTACATGACAGAGATTAAACAACACGAACAGTGATATAC
CCCATGCCTGAGGGACCTGAAGGGGTGGGTAAAATGAAAGTTTGGTTCTT
TCAAACAAAAATTAAAAGACATTCTTACGAGGTGGCAACAGGGGACTTTC
TTTCCTGGAAGAGCCCCTGCCGCAACTGCCCAAAAATCGGCCGGGCGGGA
CCCTGGGGTCCCGCCTCATCAAGGCGGGTCAGCCCACCAAGGTTTCGGCT
TCTGGTACTTACACCTTATTTGGCAAGCAACAAAACCCGCTGGGTCCCGA
ATTAACATAAGTCAGGTGCC
FMO13622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trio-RE | 3466 | CG18214-RE | 166..664 | 9..541 | 1810 | 93.4 | Plus |
| trio-RF | 2959 | CG18214-RF | 912..1385 | 34..541 | 1685 | 93.1 | Plus |
| trio-RB | 4187 | CG18214-RB | 912..1385 | 34..541 | 1685 | 93.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 999256..999377 | 315..194 | 595 | 99.2 | Minus |
| 3L | 28110227 | 3L | 999447..999543 | 195..99 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 999616..999682 | 100..34 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:45 has no hits.
FMO13622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:31 Download gff for
FMO13622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trio-RE | 158..562 | 1..416 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:54 Download gff for
FMO13622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trio-RE | 158..562 | 1..416 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:54 Download gff for
FMO13622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 999260..999375 | 196..311 | 100 | <- | Minus |
| 3L | 999447..999542 | 100..195 | 100 | <- | Minus |
| 3L | 999617..999682 | 34..99 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:31 Download gff for
FMO13622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 999617..999682 | 34..99 | 100 | <- | Minus |
| arm_3L | 999260..999375 | 196..311 | 100 | <- | Minus |
| arm_3L | 999447..999542 | 100..195 | 100 | <- | Minus |
