FMO13623.5prime Sequence
903 bp (482 high quality bases) assembled on 2013-08-23
> FMO13623.5prime
TCAGTCGACATGTCGTCACTCAAGGTCGCCGTAAGGGTTCGACCCTTCAA
CTCCCGCGAGATCGACATGGACGCGCAGCTCATCATGGAGATGGAGAACA
AGAAGACGCGTCTGCTGAAGCCACGTTTGCAGTCCATTCGCGATGCCGGG
CGGGACAATCATCACGACTTCACCTTCGACTACTCCTATTGGTCATTCGA
TGCGGAGGATCCGCACTTCGCCACCCAGGAGCAGGTTTACAGCGATCTGG
GCAATGATGTCGTGGATTGCGCCTACGAAGGATACAATGCGTGTGTTTTT
GCCTACGGACAGACTGGCTCTGGCAAGACCTTCACCATGATGGGCACGCC
AAACAATCCCGGCCTAATACCGCGCATCTGCGAGGAGCTCTTTGCCCGCA
TGCGTGTGGGCCAGGAGTCGGGCACTGGCTACAGGACGCATGCCCAGCTA
TCTGGAAGATCTAACAACGAACGGGGTCAAGGATTCTGCTTGGCGGCACA
AAGCACTGGGGCATGGGCTAAGGTGCCGGGAGCATCCGCAGCCTGGGTCC
CTATGTGGAAAACCTGTCACAGCATGCTGTCTCTGATTTCGATGAAATTC
AGGAATGCATTGCAAGGGGAAATGCGCACGCACCACGGCCAGCACCAACA
TGAACGATACGAGCAGCCGCAGTCACGCCATCTTCACGATCACATTTGTG
CAGGCTGTCTTCATGATGACATGCCAAGCGAGACAGTCTCGAAGATCCAT
TTGTCGATTGGCAGGCAGTGAGCGTGCCAATGCAACGGGAGCACGGGTCA
GCGCTGAAGAGGGCGCTCACATCACATCTCGCCTGCTCACGTGAGACTAC
TATCCGTCTGCGGACAACAGGTGGTGGGCAAACAACAGAAGTCGCCAGCA
CCA
FMO13623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp98A-RB | 5407 | CG5658-RB | 769..1587 | 5..824 | 3670 | 97.6 | Plus |
| Klp98A-RA | 5530 | CG5658-RA | 769..1587 | 5..824 | 3670 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27552780..27553096 | 603..279 | 1150 | 96 | Minus |
| 3R | 32079331 | 3R | 27555367..27555592 | 281..56 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 27552564..27552719 | 753..600 | 680 | 98.7 | Minus |
| 3R | 32079331 | 3R | 27558326..27558377 | 56..5 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:48 has no hits.
FMO13623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:34 Download gff for
FMO13623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp98A-RA | 766..1596 | 1..832 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:57 Download gff for
FMO13623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp98A-RA | 766..1596 | 1..832 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:57 Download gff for
FMO13623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27558326..27558379 | 1..56 | 94 | | Minus |
| 3R | 27555368..27555591 | 57..280 | 100 | <- | Minus |
| 3R | 27552277..27552344 | 769..832 | 91 | <- | Minus |
| 3R | 27552547..27552716 | 603..768 | 97 | <- | Minus |
| 3R | 27552781..27553094 | 281..602 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:34 Download gff for
FMO13623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23377999..23378066 | 769..832 | 91 | <- | Minus |
| arm_3R | 23378269..23378438 | 603..768 | 97 | <- | Minus |
| arm_3R | 23378503..23378816 | 281..602 | 96 | <- | Minus |
| arm_3R | 23381090..23381313 | 57..280 | 100 | <- | Minus |
| arm_3R | 23384048..23384101 | 1..56 | 94 | | Minus |
