FMO13624.5prime Sequence
739 bp (470 high quality bases) assembled on 2013-08-23
> FMO13624.5prime
TCAGTCGACATGAGCGAGTCTGCGGTAGCGGTGGAGCCGGAAGAAAGGAT
GGTTGCTAACAACAAAATCCATTTCTCCAAGGAGGTGAAGCAGGTCATCG
ACAAGGTTCTCAAAACGGACGATCCGATGGATGCGCCGGACTTCAACACT
GTGGACTACATCAACCAGCTCTTCCCCAACGAGCAATCGCTGGCCGGTAT
TGATGAGACCATCCAAAAGATGCAGTGCGAGGTGTCCCTGATTGATGACA
ACATCCGATCCGTGGTTCGTGGCCAAAACGAACACCGGCCAGGATGGACA
ACTGGCACTGTGCGAGGCTCAAAAGGTTATCAGCTCCCTGTTCAGCCACA
TCATCGACGTGAAGACCCGGGCGGGAGCGCACCGAGGAAATGGTCAAGGA
AATTAACCCGGGATATCAAGCAGCTGGACTGCGCCAAACGCAATCTAACC
GCTGGCCATCACAACGCTGAAACCACCTGCACATGCTGGTCGGTGGAATT
GAAAGTCTGAACCAATTTGATCGAGCGGGCGATCCTATGGGTGAAATCCT
TAATCCCCCTCCAGCCGATTACCGAAGGTAAACCAGCACTTCCCAGCAGT
TCTTCCGACATCGAGGACATCAAGAATCTCTCACAAAGCGTAGATAAGAT
ACAGGTTACACTGGCCCAGCAATCACAGAGGATTCAGGAGGCGTGTTCAG
CAAGTCATCGTCACAGACCCAACACGGTTGGTCTTAACC
FMO13624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3338-RA | 2960 | CG3338-RA | 81..808 | 6..739 | 3095 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4385316..4385825 | 624..103 | 1920 | 96.6 | Minus |
| 2L | 23513712 | 2L | 4385881..4385982 | 107..6 | 495 | 99 | Minus |
| 2L | 23513712 | 2L | 4385151..4385261 | 729..623 | 315 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:52 has no hits.
FMO13624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:36 Download gff for
FMO13624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3338-RA | 76..808 | 1..739 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:59 Download gff for
FMO13624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3338-RA | 76..808 | 1..739 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:59 Download gff for
FMO13624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4385139..4385259 | 625..739 | 91 | <- | Minus |
| 2L | 4385316..4385822 | 106..624 | 96 | <- | Minus |
| 2L | 4385883..4385984 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:36 Download gff for
FMO13624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4385139..4385259 | 625..739 | 91 | <- | Minus |
| arm_2L | 4385316..4385822 | 106..624 | 96 | <- | Minus |
| arm_2L | 4385883..4385984 | 1..105 | 96 | | Minus |
