FMO13625.5prime Sequence
677 bp (319 high quality bases) assembled on 2013-08-23
> FMO13625.5prime
TCAGTCGACATGGTTATGGTTAGTTCCGCGGTTCTGGGGGCCGCAGCCGG
TACAGGATTGGCCCTGATCCTGGCCGTGACAATCGTCATGTACCGCTACT
ACCTTCTGCGTAAGCGTGGCAAGGAGTGGGACGAACTGGACCGCTGGGAG
GAAACGCGCATTATGCGGAAGCTGCAGATGAAGGAGGTGGCTATTGCCAA
GGAATGCCAACCCATCCAGCCGGCCAGTCAGCTGCATGGAATGCACGGCG
GCATGGGCCTAAACCATCACCACATGGGCACAGTTTCGGGCACCGGAACG
GACATCTTGCGCGGACCCGCCGAATGGTTCACAGTCCGCTTTACTTGCAT
CACCAAGGTCGCTCTTTTCGCCGCCCCTCAGCGACGCCGTCATCTCCAGC
AGAGCACCGGGACAGCCCCCCTTCAGCATCGGTCTTCAAGGCTTTCACCA
CAAAAAGACTTTGGACCAACGACAAACTCGTTGCCAGTGACCTGATTTCC
CCCCTTTGCCCGGTCCCCATCCCTGGAACATTTCTTGGAGGTCGTGCGCA
GCCCCCCCCCCGCGATCTGGGGATCTGAGGAGCCAGCCCCCCAACACTTG
CTCTTGCGGACGACGGAATGGAGGACCGTGCGGAAAGGCGGGTGGAGGCT
TCCTTCCCGTGTATCCCCAACGACCCG
FMO13625.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytbeta-RC | 3854 | CG42333-RC | 438..949 | 10..500 | 1810 | 93 | Plus |
| Sytbeta-RD | 3952 | CG42333-RD | 708..1047 | 182..500 | 950 | 89.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15048731..15048905 | 184..10 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 15018761..15018949 | 369..182 | 805 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:37:22 has no hits.
FMO13625.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:54 Download gff for
FMO13625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytbeta-RC | 430..851 | 1..416 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:19 Download gff for
FMO13625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytbeta-RC | 430..851 | 1..416 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:19 Download gff for
FMO13625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15018708..15018947 | 184..416 | 93 | <- | Minus |
| 3L | 15048732..15048913 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:54 Download gff for
FMO13625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15011808..15012047 | 184..416 | 93 | <- | Minus |
| arm_3L | 15041832..15042013 | 1..183 | 97 | | Minus |
