FMO13627.5prime Sequence
699 bp (383 high quality bases) assembled on 2013-08-23
> FMO13627.5prime
TCAGTCGACATGTTGCCGTACCAGGCAGCCGTGGCCATGGACTACGCCGG
ATACCAGAGACAGCCCACGCCCGGACATCCCGGAAGCCACATGGCCACCA
TGGGATCTCTGGGCATGCCCGCGGTGCCCTTCACCCACAGCTGGATGGTG
CCCACGCAGGACCTTTGCGCCATGCCACCCTACAACAAAATGACCGGACA
CCAGCAGCCGCCAGGTGCCGGAATGCACGCCCAGCAACAGCCCCTCGAGC
CCGGCATCCTGGAGCTGCGCAAGGGAGAAAGTCGAGGGACGCGGCGAGAT
CGCGGCGCGGAAAGGAAAAACTACGAGTTCTACGAGCTAGCCCAAGATGC
TCCCTCTGCCCGGCAGCCATCACCAGCCAGCTGAACAAGGCCTCGATCAT
AAAAACTGACCATCACCTACCTGAAGCTGAGGGATTTTCTCCGGACACGG
CGATCCGCCATGAACTCCGGGAAGCCTCCTAGCAGCAGTAAGCTAAAAAG
TGCCGCCATTTCGTCGCAGCCCCCCTTGTTGATTTGGTTCGAGCAACATC
AGGCACCCCCCATTTACAGTCGCTGGATGGTTTCGCCCCTAGCTGGGGCG
GGAGACGGACGCTTCCTGTATATTTCCGAGACGGTGTCCATTCTATTTGG
GGCCTGTCGCAGGTGGAGATGACGGGTAGCAGCATTCTTCGACTATATC
FMO13627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trh-RG | 4483 | CG42865-RG | 654..1328 | 10..699 | 2850 | 96 | Plus |
| trh-RB | 4501 | CG42865-RB | 654..1328 | 10..699 | 2850 | 96 | Plus |
| trh-RA | 4588 | CG42865-RA | 654..1328 | 10..699 | 2850 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 376419..376663 | 254..10 | 1225 | 100 | Minus |
| 3L | 28110227 | 3L | 373658..373896 | 501..254 | 720 | 93.5 | Minus |
| 3L | 28110227 | 3L | 371090..371218 | 699..567 | 435 | 95.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:37:28 has no hits.
FMO13627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:59 Download gff for
FMO13627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trh-RA | 647..1328 | 2..699 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:23 Download gff for
FMO13627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trh-RA | 647..1328 | 2..699 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:23 Download gff for
FMO13627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 376419..376670 | 2..254 | 98 | | Minus |
| 3L | 371090..371215 | 570..699 | 95 | <- | Minus |
| 3L | 371440..371507 | 500..569 | 88 | <- | Minus |
| 3L | 373660..373895 | 255..499 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:59 Download gff for
FMO13627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 371090..371215 | 570..699 | 95 | <- | Minus |
| arm_3L | 371440..371507 | 500..569 | 88 | <- | Minus |
| arm_3L | 373660..373895 | 255..499 | 94 | <- | Minus |
| arm_3L | 376419..376670 | 2..254 | 98 | | Minus |
