FMO13628.5prime Sequence
1058 bp (945 high quality bases) assembled on 2013-08-23
> FMO13628.5prime
TCAGTCGACATGGCCAAGCCCCACTCGGATGCGGATGCCTCTGGCCTGGG
CTACGCCTACCAGCTGCCGTCCGGCGGCCTCCTGCTGCGCCTCAAATCTT
CCCTCTCACAGTTCAGCGATTTGTTCAGCGACTTCAGCAGGTACATCTCG
CCCGCCTATCATCACGATCGCTGCGAGCGATCCGTCCATATGCGACTCTA
CTCGATGCACAAGCGCGAGTTTGTCATGGTCTTCCTGGGATTCTTCACCT
GCTTCGGTCTGGGCATAGTCATCGGGCTGACGGGACCGCCCATAACCAGC
ACATCATCGCTGACCGCCCAGCAGATTCTGGCGAACACCTCGCTGGCGCA
TAGCCCAACGGTCCTGGGGAAGGGACCCTTCGCCATGAAGTCGCCGCTGA
CCACCACATATTCGCAGCAAATGTGGCTGATAGCCAAGCTGGTGACGGAC
AACAATGATGACGAGCGGTACGACAAGAGTTTCCAAGTGAGCGTCTCAAT
CGATGGCATAAACGAGCAGCACAAGCCCCAAAGTGTCCTCGGATCCGGAG
TGGCTCACAACCGGACGCGGCACTTGGTCTGCGTACGGAACGACTGCGAG
GAGTTCACGGTGATGCATCTGGGATTCCTCGACTATGCCCACTATATTAT
CACTGTGCGCTTTTACGGCTTGGAGTCATTCCATCAGAAGTATAATATAC
GCAGCATAACATTTTACTTCAAGACTTACAGTCCGGACTTCACGCAGATT
GAAATCTGGTTTAGTGCATCTTTCTGCTGTTCACCTTCATTGTCATATGC
TGGTATGCCCACACCTTGCGCAAGTATCCAATCTATGATTGGTCCATTGA
GCAGCGATGGGTTGTCGGTACTCCTGCCCCTGCTCCTTTTGTACGACAAT
CCCTTCTTCCCGCTGAAAATTCCTGATGAACTCCTGGCCTGCCTGGAATG
ATGGACGCCATCTGCCAGACGACGTTCCCTTGTGGCTCTCACTCCATGTT
ATGCTGTGGCAGTCTATCACTGACATGCGCAACAGACGAACGCCAGCCGT
CCTTGCGG
FMO13628.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-RA | 2087 | CG13409-RA | 177..1172 | 9..1008 | 4690 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22031273..22031724 | 460..9 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 22030950..22031207 | 717..460 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 22030641..22030740 | 898..798 | 455 | 99 | Minus |
| 3R | 32079331 | 3R | 22030816..22030896 | 797..718 | 355 | 98.8 | Minus |
| 3R | 32079331 | 3R | 22030500..22030583 | 984..899 | 195 | 87.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:37:31 has no hits.
FMO13628.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:00 Download gff for
FMO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 169..1163 | 1..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:25 Download gff for
FMO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 169..1163 | 1..1000 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:25 Download gff for
FMO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22030816..22030896 | 718..797 | 98 | <- | Minus |
| 3R | 22030523..22030583 | 899..961 | 93 | <- | Minus |
| 3R | 22030641..22030740 | 798..898 | 99 | <- | Minus |
| 3R | 22030950..22031206 | 461..717 | 100 | <- | Minus |
| 3R | 22031273..22031731 | 1..460 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:00 Download gff for
FMO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17856245..17856305 | 899..961 | 93 | <- | Minus |
| arm_3R | 17856363..17856462 | 798..898 | 99 | <- | Minus |
| arm_3R | 17856538..17856618 | 718..797 | 98 | <- | Minus |
| arm_3R | 17856672..17856928 | 461..717 | 100 | <- | Minus |
| arm_3R | 17856995..17857453 | 1..460 | 99 | | Minus |
