FMO13629.5prime Sequence
971 bp (746 high quality bases) assembled on 2013-08-23
> FMO13629.5prime
TCAGTCGACATGGCATCCGAACTGGATCAATTCGCCGACCTGGAACTCTC
AAAGGAGGATCGTGAACAGATCTTCGATCCGCCACTGGATCGACAGCAGT
TGGAAGGTGCTGGCACCTCAAGAGCTGCTGTTGGTCTGAACGGTGTCGAG
TTCGAGGGCAGCAAGCTGCATGCCGAGCAGCTGGACAAGAACCAGCGGCG
TAGCCAGCGTAACCAGCGCAATCCGTATCCGGGTATGCCCGGTCCCGGAC
GCCAGGCGGACTTTCCGCTGCGCATTCTTGTGCAGAGCGAAATGGTGGGC
GCCATCATTGGTCGACAGGGCAGCACCATCAGGACGATCACACAACAGAG
CCGTGCTCGCGTCGACGTCCATCGTAAGGAGAATGTTGGATCGCTGGAAA
AATCGATTACGATCTATGGCAATCCGGAGAACTGCACCAACGCCTGTAAG
CGCATCCTGGAAGTTATGCATCAGGAGGCCATCTCTACGAATAAGGGTGA
ACTCTCCCCGGAATGCAGTGAAATTAGCCTCAAAATACTCGCCCACAACA
ATTTGATTGGACGAATCATTGGCAAGTCGGGCAATACCATTAAACGGATC
ATGCAGGACACCGATACGAAGATCACTGTCAGCTCTATCAACGACATCAA
CAGCTTCAATTTGGAGCGAATCATTACGGTCAAGGGATTAATTGAGAACA
TGTCGCGTGCTGAGAACCAAATTAGCACCAAGCTGCGCCAGAGCTACGAG
AACGATCTGCAGGCGATGGCGCCGCAGAGCCTCATGTTCCCCGGTCTCAT
CCGATGGCAATGATGTCGACACCGGGCAACGGCATGTCTCAATACGAGCA
TGCCGTCCCTCGTGTCAAGCTTTGCATGTCCAGACTCCTGCTAGTGTGGT
GCCACCGTCTTCCCAATGACCTACAGAAACATCTATCTCTACATACCAAC
AACGCTGTCGTGCATATCGAC
FMO13629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Imp-RJ | 3942 | CG1691-RJ | 1128..2091 | 10..960 | 4430 | 98.1 | Plus |
| Imp-RF | 4481 | CG1691-RF | 1128..2070 | 10..960 | 4105 | 96 | Plus |
| Imp-RD | 8752 | CG1691-RD | 767..1709 | 10..960 | 4105 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10798619..10798995 | 497..121 | 1855 | 99.5 | Minus |
| X | 23542271 | X | 10798090..10798566 | 960..497 | 1750 | 96 | Minus |
| X | 23542271 | X | 10813249..10813361 | 122..10 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:37:34 has no hits.
FMO13629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:03 Download gff for
FMO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Imp-RJ | 1124..2099 | 10..969 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:27 Download gff for
FMO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Imp-RJ | 1128..2103 | 10..969 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:27 Download gff for
FMO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10813249..10813361 | 10..122 | 100 | | Minus |
| X | 10798076..10798565 | 498..971 | 95 | <- | Minus |
| X | 10798619..10798993 | 123..497 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:03 Download gff for
FMO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10692109..10692598 | 498..971 | 95 | <- | Minus |
| arm_X | 10692652..10693026 | 123..497 | 99 | <- | Minus |
| arm_X | 10707282..10707394 | 10..122 | 100 | | Minus |
