FMO13630.5prime Sequence
935 bp (692 high quality bases) assembled on 2013-08-23
> FMO13630.5prime
TCAGTCGACATGGCCTCCTCCACATCCTCTGCGCGTGGGAACAACAAAGC
AGCCACCACCAACACCACCGCAGCCACCGCTCCCGTCTCCACCGCCTCGT
CGGCTGCCGTTTCCGGTTCCGGTGCCACCTCCGCGGCAGCTACTGCCTCC
GCTCCGCCAGCTGTGACCCTAAGCGAGCTGATTGGCCAGCAGCTGAAGCA
CCTGAACGCCGATGAGCTGCTGCACAAGGACGAGCTGCAGCTGCTCCTGC
TCATAACGCCTGTGCAACGCCAGAAACTGAGCCGCAATCTGGAGGATGGC
GATCTGGAGGCCAGCACCTCGGCGGCGCCACTTTCGCGTCCCGAAAACGG
CGAGGAGGATGACGACCTGATTGGGGCGGTGGGCGGACTCGGTATTTCGT
CCCCAACTACGACCAAGGAGCCGGGGCTAGAATTTTAGGGCCACACGTAC
TCAAATGGTTTCAACATCTGCGCCCACCAAACGGGGCCACTTCAAGTCGG
GAGGAGGAGTCTCGTCGTCGGCGGGGAGGCTGGTAACGATTCGTATCGCA
AGGAGCGGCATCCGCTCAAGGCCAGCGATCTATTCACGGAGGCCATATTC
CTGGCCCCCGCCCGGAACACGCTAGCAGCCGCCCTGGCCCACGCCAATCG
CTCCCTGGTTCTCTTTGATTGCGGTCTATATGCGGAATCCTACGACGACT
GCCTGTGCGCCCTGGATCTGGGCTATCCGGAGGAGTACTTGCCATTGATT
AAGCTGCGCCAAGCCGCCTGTGCCTTAAAACTGCGTAACTTTGCGCTCTG
CGAGAGCATCTGCACGAGCTCCTGCACATTGAACTGACCAGGTGTCGAAG
CGAGGACCATGAGCTCTGGCATCATGCGAAGTGCCTCAGGTGGAGCTTCG
AGATGGCGTACGACGCGCGATGATTCTGATCACGA
FMO13630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dao-RC | 2977 | CG15267-RC | 261..1178 | 10..924 | 4165 | 97.8 | Plus |
| dao-RB | 4083 | CG15267-RB | 261..1178 | 10..924 | 4165 | 97.8 | Plus |
| dao-RA | 2975 | CG15267-RA | 261..1178 | 10..924 | 4165 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15249139..15249564 | 10..435 | 2100 | 99.5 | Plus |
| 2L | 23513712 | 2L | 15250647..15250889 | 439..685 | 1020 | 98 | Plus |
| 2L | 23513712 | 2L | 15251006..15251223 | 684..896 | 795 | 96.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:37 has no hits.
FMO13630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:04 Download gff for
FMO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dao-RA | 254..1181 | 1..928 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:29 Download gff for
FMO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dao-RA | 254..1181 | 1..928 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:29 Download gff for
FMO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15249132..15249566 | 1..439 | 98 | -> | Plus |
| 2L | 15250648..15250888 | 440..684 | 97 | -> | Plus |
| 2L | 15251007..15251258 | 685..928 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:04 Download gff for
FMO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15249132..15249566 | 1..439 | 98 | -> | Plus |
| arm_2L | 15250648..15250888 | 440..684 | 97 | -> | Plus |
| arm_2L | 15251007..15251258 | 685..928 | 94 | | Plus |
