FMO13632.5prime Sequence
1037 bp (882 high quality bases) assembled on 2013-08-23
> FMO13632.5prime
TCAGTCGACATGTCCAAGAGAAGTTGCCAGATACTCACCCTGTTGGGCTT
GTGCCTGGTCTGTCATGAGGCGACCTTGGTCGGGGGCCACGTGCTGGTTT
ACCGGAAAGCAACCAGCCAGTTGATCGAGGAGTTCAATGATCTGCCAGCT
CAATTCGGTCCCAATCTGCCTTCAAATGGTCTCAAAGTGTATGTGGTTCC
CGCTAGGCGCCCTTATTACGGTTGTGATAGCCTGGACAGACCACCGCACC
TGAAATACCCACCCTCAGCCAAATTTGTGGCACTTGTAGCGCGTGGCGAA
TGCGTCTTTGAGCGTAAGATACGAGTGGCCCAGAATGCGAGTTATTCTGC
TGTGATTGTTTACAATAATGAAGGCGATGACTTGGAGCAAATGTCCGCCG
AAAACATAACGGGTATAAGAATACCCTCGGTTTTCGTGGGCCACACGACG
GGTAAAGCGCTGGCCACTTACTTTACGACCGAGGTGGTGCTAATCATCAA
CGATGAGCTGCCCTTCAATATCAATACACAGTTAATATTGCCGTTTTCCA
TTCTGATCGGTATGTGCTTCATCATAATGGTTATCTATATGATCTACAAG
TGCATCCGCGAGCAGCGCCGCTTGCGTCGCCATCGACTGCCAAAGAGCAT
GCTGAAGAAATTGCCAGTGCTCCGATATACCAAGACAACGCAAACAACAA
GTACGACACTGTGTGATCTGTCTGGAGGACTTCATAGAGGACGATAGCTT
CGCGTGCTGCCCTGCTCACATCCCTATCACACGCACTGCATGATCATGCT
TACGAAAACGTCGGTGTGTCCCATTTGTAAGCGCAAGGTTTTACGAAGGC
GAAGCGCGTGCAGTCGAGTCGACAGCTTCTTGATATGTCACGATACGATG
ACGACCACCGCCGCTGCTGCACACAGCAGTCAATGTAGCAGGGGTCAAGG
AGCTCGGCTTCTTCCGCTGGTGAAGACTGGAACAGTTAAGGTTGCGGGGG
GGGTGTCTTGAACCCGACATGAACCTCCCCGGTCCCC
FMO13632.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| godzilla-RD | 3037 | CG10277-RD | 435..1425 | 10..972 | 4245 | 97 | Plus |
| godzilla-RC | 3158 | CG10277-RC | 556..1546 | 10..972 | 4245 | 97 | Plus |
| godzilla-RB | 3378 | CG10277-RB | 776..1766 | 10..972 | 4245 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6385747..6385943 | 385..581 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 6385356..6385531 | 118..293 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 6386002..6386198 | 579..772 | 835 | 98.5 | Plus |
| 3R | 32079331 | 3R | 6385148..6385258 | 10..120 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 6385590..6385682 | 293..385 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:44 has no hits.
FMO13632.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:07 Download gff for
FMO13632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10277-RB | 774..1782 | 7..985 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:33 Download gff for
FMO13632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| godzilla-RB | 774..1782 | 7..985 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:33 Download gff for
FMO13632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6386003..6386198 | 580..772 | 98 | -> | Plus |
| 3R | 6385146..6385258 | 7..120 | 99 | -> | Plus |
| 3R | 6385359..6385531 | 121..293 | 100 | -> | Plus |
| 3R | 6385591..6385682 | 294..385 | 100 | -> | Plus |
| 3R | 6385748..6385941 | 386..579 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:07 Download gff for
FMO13632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2210868..2210980 | 7..120 | 99 | -> | Plus |
| arm_3R | 2211081..2211253 | 121..293 | 100 | -> | Plus |
| arm_3R | 2211313..2211404 | 294..385 | 100 | -> | Plus |
| arm_3R | 2211470..2211663 | 386..579 | 100 | -> | Plus |
| arm_3R | 2211725..2211920 | 580..772 | 98 | -> | Plus |
