FMO13635.5prime Sequence
894 bp (698 high quality bases) assembled on 2013-08-23
> FMO13635.5prime
TCAGTCGACATGGCCACATTGGGCCTGTCAAAAGTCTTCATACTGGATAA
ATACTTTACCGAATTGCAAAAATTTTGGGAGACGGAGAAGAAGCTGCAGG
ATGCATCTTCATCCAACGAGGCAGTTCATCTGCAGCAGCGGCTCAAAAGC
CTGAGCACCGAATTGGTGACTCTGCGAAACCGCCTGCATGTGGGTCATGG
ACCGGGTCAGGGTCAGAGCCAGGGAAATGGCGCGCAGCCCGTCGCCCCAG
CTCCCAATGCGGGTCCCAAGGCCAACAACTTTGACCTAAACGCATCCAGT
CCGAATCTCAATCTGAGTTCCAGCGGCGCAGGACTTTCAGCCAGTGCAGT
TCAGCAACACACCAATGGACATCACACGACATCGAAGAATCACAGCTTCA
GCCACACATTGCCCGCAAACTCGGGCTCTGGTGGAGGAGGAGGCGCTGGA
GGAGGCGCCGTTGTGTCGGCGAGGAACACGTCGATTCCACATCCACTTCC
GCATCAGTTGGCCGAGAAAGCCGGGCCTGTCGCATCAGCAGAGTGCAGCG
GACATGGTCAGTCCACCGGGACACTGCCACATATGAGCGGCATGGGAAGT
ATCCTGGGGCAAAATTCCCATTCCCATGCACCGGTCAACAACACAGCAAC
AACTCCAACACGCTGCCCATGCGCACCTCCACTCCGGACACTGGCATCAT
GGCGGAGGCGTGGCACATCTCAGCACGCCCACAGCAGCATGGCATCATCC
CGCAGTCGAGCACACGGATCCCTGCCAGAGTGTGAGACTCTGCCTTTGGA
TCGGATCTCGAAGTCAGCAGAGATGCACAGCAGCAGCACAGGCACTCCTC
GCCAAGACATGCAGATCTGATCACTGTCGGACGCTCACGACATG
FMO13635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d-RD | 5120 | CG42840-RD | 930..1820 | 10..872 | 3690 | 96.4 | Plus |
| d-RE | 5093 | CG42840-RE | 993..1793 | 100..872 | 3240 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8483129..8483416 | 100..387 | 1440 | 100 | Plus |
| 2L | 23513712 | 2L | 8483564..8483871 | 386..691 | 1345 | 98.7 | Plus |
| 2L | 23513712 | 2L | 8479634..8479724 | 10..100 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:19 has no hits.
FMO13635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:51 Download gff for
FMO13635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d-RD | 921..1811 | 1..864 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:17 Download gff for
FMO13635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d-RD | 921..1811 | 1..864 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:17 Download gff for
FMO13635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8479625..8479724 | 1..100 | 96 | -> | Plus |
| 2L | 8483130..8483416 | 101..387 | 100 | -> | Plus |
| 2L | 8483566..8484069 | 388..864 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:51 Download gff for
FMO13635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8479625..8479724 | 1..100 | 96 | -> | Plus |
| arm_2L | 8483130..8483416 | 101..387 | 100 | -> | Plus |
| arm_2L | 8483566..8484069 | 388..864 | 93 | | Plus |
