FMO13638.5prime Sequence
778 bp (544 high quality bases) assembled on 2013-08-23
> FMO13638.5prime
TCAGTCGACATGCTATCCGCAACTTTGGGGGCCAATGGCGGCTCTCAGCC
GCTCAGTCCCTCCGCCCAGGCGACGCTCAGCAAGCACCTGCCGCGCCTCC
AGTCGAAGCGTCTTCTCCAGCAGACGCAGTTGCAGTCGCCGGCTGCCGCC
AGACCACAGACCTGCGATGCCAGCTGCCTGACGGAGCTGTGCAGCAGCGA
GAATTTGCCCGAGGTGGAGATTTTCTCACTGCTGGAGGAGCAGATACCCA
AGTACAAGGTGCGCAACGATTTCCTCACAAACTTCTCGGGCTATGCGAAT
GAGGACTGGTTCGTTCCGGCACCAGCGCTGCCCATTCCGCCGGAGGGTCT
GGGCTTGACCAAGGAGCAGACAAGAGAGTGCCTAAACTATTTCCTTCTAT
GCGGCAACCGCGTTAGCCAAATGACTCGGGCGTACGATGACATTGAGGCC
GTGACGCGACTGCTGGAGGAGAAAGGAGAAGGACCTAGAGCTGACCGTGC
AGATTGGCAAAGAGCTGCTCAACCCAGAACAAATGCACTCGAGGCACGGG
GTCGCGGATCTGGAAACCGATCTCAAGGCCTCCAACGACGATCGTGCCCA
GCTGGTCACGAGCTGCACAAGAAGAACGAGCTCATTCTCTGTGCTTACCA
ACGATGCAGACGATGGCACAGATACTGACACTCCCACATGTCGAAGTCTA
TACCTTTGGATCTACTGCAGCGCAAGGTCAACTCCCTGCTCGACGAGACA
GTCTCTGAAATGCGAAGCACCCACTGGC
FMO13638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| milt-RC | 5482 | CG43227-RC | 678..1447 | 10..778 | 3585 | 98.5 | Plus |
| milt-RA | 4231 | CG43227-RA | 590..1359 | 10..778 | 3585 | 98.5 | Plus |
| milt-RF | 5469 | CG43227-RF | 1050..1434 | 395..778 | 1660 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7051367..7051645 | 395..677 | 1120 | 97.9 | Plus |
| 2L | 23513712 | 2L | 7040949..7041159 | 184..394 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 7040606..7040780 | 10..184 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 7051759..7051853 | 677..768 | 330 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:59 has no hits.
FMO13638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:19 Download gff for
FMO13638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| milt-RA | 584..1359 | 2..778 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:42 Download gff for
FMO13638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| milt-RA | 584..1359 | 2..778 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:42 Download gff for
FMO13638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7051760..7051865 | 678..778 | 94 | | Plus |
| 2L | 7040950..7041159 | 185..394 | 100 | -> | Plus |
| 2L | 7051367..7051645 | 395..677 | 97 | -> | Plus |
| 2L | 7040600..7040780 | 2..184 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:19 Download gff for
FMO13638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7040600..7040780 | 2..184 | 97 | -> | Plus |
| arm_2L | 7040950..7041159 | 185..394 | 100 | -> | Plus |
| arm_2L | 7051367..7051645 | 395..677 | 97 | -> | Plus |
| arm_2L | 7051760..7051865 | 678..778 | 94 | | Plus |
