FMO13641.5prime Sequence
813 bp (671 high quality bases) assembled on 2013-08-23
> FMO13641.5prime
TCAGTCGACATGAGCAGCAGCTATAAGCCCCGCAGCAGCGACGAGGCTCT
CGCCGAGCAGTTTAGTTTAGCCCGTGCCGGAAGTGGCACCAAGCCCCCGG
CCACGCCCACCTACCGCCAGATATCCGGCGCCATGGCAACTCTGCCGCGC
CACGATAACAACCACAATCACAATGACAACTCTAGCCGCATACGCAGCGA
TTCCACAGCGACGTCGAGAACCTGCGTCTATATTGGCGGAGCGCCCACGG
GTGGCGGAAACGGAAATGAACAGATATCCGTGACCCTAGATCGCCGACAG
CCGCAGCGAATGTCCTGGCTGAATATGCGACGCGCCAAGGCCAACGAGAC
GGACCTGCCCACCGTCACGCCCTCACCACAAACCACTCGCAGCTGCATCT
CCACGGTGTCCAGTGTGGTGGACAGTGGTGGCGGTCGCACCACCGCCACT
TCCGGTCGCATCAGCTCCAGCGGCATCGTCACCCTGAGCGACAGCAACAA
CACACTAAGTGAGATCCAGGGCGGCTACCATGACATGGACCACGATGCGG
TGTCCAAGAACTTTCTCTATATCGGCTTCCGCACACAACCATCACCACGG
CCAGCAATGCCAAGCTCCTTGCCCGCCGTTGAGGATGAGTCCCAACAAGC
AGACGAAATGCTCGGTGTTCCGCCGGGCTCGTGCTCTGTCTGTGCCTGAA
CCCTGAGCTATGCGAAACGTGGTCCCGCTTCCCACGCGAGTTGGACCGCT
ACGGGTCGGCGTAACCTGGGTTCCGTACGGTGGAGTTGCTGTTTCTAGTC
GGCCCTGCCCCAT
FMO13641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blot-RB | 4054 | CG3897-RB | 601..1389 | 10..810 | 3690 | 98.4 | Plus |
| blot-RD | 3624 | CG3897-RD | 171..959 | 10..810 | 3690 | 98.4 | Plus |
| blot-RE | 3089 | CG3897-RE | 275..424 | 653..810 | 575 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17409234..17409863 | 642..10 | 3015 | 99.5 | Minus |
| 3L | 28110227 | 3L | 17401698..17401846 | 804..649 | 420 | 93.6 | Minus |
Blast to na_te.dros performed 2014-11-28 23:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6937 | 431..519 | 118 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2398 | 438..502 | 118 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..6897 | 437..502 | 114 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6846 | 437..502 | 114 | 63.6 | Plus |
FMO13641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:23 Download gff for
FMO13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RD | 163..961 | 1..813 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:47 Download gff for
FMO13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RD | 163..961 | 1..813 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:47 Download gff for
FMO13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17401691..17401842 | 653..813 | 93 | <- | Minus |
| 3L | 17409225..17409869 | 1..652 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:23 Download gff for
FMO13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17394791..17394942 | 653..813 | 93 | <- | Minus |
| arm_3L | 17402325..17402969 | 1..652 | 98 | | Minus |
