FMO13645.5prime Sequence
834 bp (620 high quality bases) assembled on 2013-08-23
> FMO13645.5prime
TCAGTCGACATGGCGGAGAACGGACTGCGCGTGCCAGGGTCATCCGCGGT
GGCCTCTGCGGTGGCTTCCACTGCGACGGGAGTCGGCGGTGGATCAGCAG
CGGGAACTGCGGGGGCCGGGACAGGAGTGGTGCCCACCGGCGTCAGCGGC
GGGACGAGCAACGGGGAGCATGAGAACGAACACAACGCCAACGCAGACGG
CGAGAAGGCCCAGCCGGCGCCGGCGGTCCAGAAGTACATGCAGGAGCTCA
TGACGGAGCGATCGCGCATGGAAAACCACTTCCCCCTGGCGGTGAAGCTA
ATTGACGAAGCTCTGGAGCGTGTGCAGCTAAACGGACGCATTCCCACGAG
AGACCAGTACGCCGATGTCTACCAGCAGCGCACCATCAAGCTGTCCCAAA
AAGTGCACGTGCCCATCAAGGGACAAGAAGTTCAACTATGTGGGCAAGCT
ACTGGGGCCCAAGGGCAACTCACTGCGTCGCCTGCAGGAGGAGACGCAGT
GCAAGATCGTCATACTTGGTCGCTTCTCAATGAAGGATCGCGCACGTGAG
AGAGGAGCTGCGCAACTCCGCGGACGCGGAAGTACGCCCACCTGAATCCT
TCCTTCTGCACGTCCGAGGTGTCACCATTTCTTCCGCCCCGCCGAGGCGT
ACGCTCGGGTGGCGTATGCCCTGGCCCGAGATTCGGCGGTACCTTCACGC
CGGACAGCACGATGACATCCGCCAAGAGCAGTACCCGCGAAACTCATGGA
GGATCCCGGAAGGCAGCAAGAGCTGAACGCTTCGCCAGCTGCAACACAAT
CAAATGGCTGCATCTATGGTTGCATGAAGAAGTA
FMO13645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-2-RB | 2947 | CG5821-RB | 258..1033 | 10..796 | 3450 | 97.3 | Plus |
| qkr58E-2-RC | 2907 | CG5821-RC | 507..1282 | 10..796 | 3450 | 97.3 | Plus |
| qkr58E-2-RA | 2658 | CG5821-RA | 258..1033 | 10..796 | 3450 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22416426..22416863 | 309..756 | 1560 | 95.5 | Plus |
| 2R | 25286936 | 2R | 22416066..22416366 | 10..310 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 21773807..21773885 | 429..507 | 245 | 87.3 | Plus |
| 2R | 25286936 | 2R | 22410975..22411039 | 507..443 | 235 | 90.8 | Minus |
| 2R | 25286936 | 2R | 22595165..22595235 | 443..513 | 235 | 88.7 | Plus |
| 2L | 23513712 | 2L | 20863694..20863758 | 507..443 | 220 | 89.2 | Minus |
| 2R | 25286936 | 2R | 17471170..17471248 | 429..507 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:38:15 has no hits.
FMO13645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:29 Download gff for
FMO13645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-2-RA | 258..1049 | 10..812 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:54 Download gff for
FMO13645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-2-RA | 258..1049 | 10..812 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:54 Download gff for
FMO13645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22416066..22416366 | 10..310 | 100 | -> | Plus |
| 2R | 22416428..22416918 | 311..812 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:29 Download gff for
FMO13645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18303571..18303871 | 10..310 | 100 | -> | Plus |
| arm_2R | 18303933..18304423 | 311..812 | 94 | | Plus |
