FMO13646.5prime Sequence
861 bp (708 high quality bases) assembled on 2013-08-23
> FMO13646.5prime
TCAGTCGACATGAAGACTTTCGTTACTTCCTGGGCCGATGAGGTGGATGC
GGACTATGTGGATGGACTGCCGCCTTCTAATGAGTACATTAAGGGCGACT
TCAAGTACGTGACGGAGTATAAGTTCAACGATGATGGCAAGAAGGTGAAA
GTGGTGCGAACCTTCAAGATCGAGAAGCAGATTGTTCCGAAGGCTGTGGC
TCGTCGTCGCAACTGGGTTAAGTTTGGGGATTCGCGATCGGACAAGCCCG
GACCCAATTCCCAGACGACAATGGCCTCCGAGGAGATCTTTATGCAATTC
ATCGGCTCCAAAGATTTCGACCAGACCCACGAAACCCAACTTGATCCCGG
CAAGAAACATCGCCAAGTGCCGCATTTGCAATGGCGAACACTGGAGTGTC
AATTGTCCCTACAAGGGCACCTCGATGGATAGCAAAACCGTGATGGAAAC
CAAGGCCAATGCCGCTGCAGCTGCCGCTATAAGTGATCCCAGCAAGACCG
GAAAATATGTACCCCCCTTCATGAAGGGACGGCGGAGGCATATCTGGCAG
CAAAAATTGGGGACGGGGTCGGGATCGGGACGATTCGTCGGCAGTTCGCA
TCTCAAACCTATCCGAATCCATGACCGAGACTGATCTCGAGGAGCTGGTA
AAGAAAATCGGACCACACACCAAGATGTATTTGGCGCGCGAAAAAACAGC
GCCTCTGCAAGGGAATCGCTACGTGCACTTCAAGTTCGCAAGATGCAGCT
GCGGCATGAAGATCTAATGCACGGCTACGACACTGATCTCTGCGTCGAGT
GTCAGGCTCAGCGCAGCTTCTAGACAATCGTTTGCGCGCGGGCAGTAGTG
GTCTTATCATA
FMO13646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10881-RA | 979 | CG10881-RA | 63..865 | 10..801 | 3570 | 97.4 | Plus |
| CG8636-RA | 1027 | CG8636-RA | 191..516 | 103..429 | 365 | 74.7 | Plus |
| CG8636-RA | 1027 | CG8636-RA | 686..876 | 621..798 | 295 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20408327..20409055 | 10..737 | 3375 | 99 | Plus |
| X | 23542271 | X | 2609758..2610083 | 429..103 | 325 | 74 | Minus |
| X | 23542271 | X | 2609472..2609588 | 734..621 | 210 | 84.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:37:50 has no hits.
FMO13646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:12 Download gff for
FMO13646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10881-RA | 63..879 | 10..812 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:37 Download gff for
FMO13646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10881-RA | 63..879 | 10..812 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:37 Download gff for
FMO13646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20408327..20409143 | 10..812 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:12 Download gff for
FMO13646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16234049..16234865 | 10..812 | 96 | | Plus |
