FMO13648.5prime Sequence
327 bp (242 high quality bases) assembled on 2013-08-23
> FMO13648.5prime
TCAGTCGACATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGATTCTG
CTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAAGACGC
CCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGACGCCC
AAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGCGGTGG
TATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAACAACC
AGTGAGACGGACAGGGATCATACGGCGGCTATGGCGCCGGCTACGGCGGA
TATGGTGCCGGTGGTTATGGCGACTAC
FMO13648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RC | 2239 | CG16901-RC | 609..926 | 10..327 | 1560 | 99.4 | Plus |
| sqd-RE | 2844 | CG16901-RE | 884..1201 | 10..327 | 1560 | 99.4 | Plus |
| sqd-RA | 5551 | CG16901-RA | 613..930 | 10..327 | 1560 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13642511..13642740 | 239..10 | 1150 | 100 | Minus |
| 3R | 32079331 | 3R | 13642339..13642428 | 327..238 | 420 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:37:53 has no hits.
FMO13648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:15 Download gff for
FMO13648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 602..930 | 1..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:38 Download gff for
FMO13648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 602..930 | 1..327 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:38 Download gff for
FMO13648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13642339..13642427 | 239..327 | 97 | <- | Minus |
| 3R | 13642512..13642751 | 1..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:15 Download gff for
FMO13648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9468061..9468149 | 239..327 | 97 | <- | Minus |
| arm_3R | 9468234..9468473 | 1..238 | 98 | | Minus |
