FMO13650.5prime Sequence
793 bp (387 high quality bases) assembled on 2013-08-23
> FMO13650.5prime
TCAGTCGACATGATAAAAATGGAAACCCCAAGCGAGTTTACTGAGAAACA
GCCACCCACCCACGATCACCAGCCGCGTCTTAACGAGGTGGCCCAAAAGT
TTCTCGCCGATTTGGACGAGGAGCGCCAGCGATTGTCCGCGGACTTTCCA
CTTTGCGCACTGCTAATCGACGAGGCTGTGGACCGTGTCTACTGCACTGG
TCGTATTCCCGGAAAAGAGTTCTACGCAGACGTGTACAAGCAGAAGCCGA
TGAAGATTACCCAAAAGGTCTTCGTGCCCGTAAAGCAGTATCCCAAGTTT
CAACTTCACTGGCAAGATCCCTGGGGCCCCAAGGGCAAATTCGCTGCGTC
GCCTTCAGGAAGGAGACCCCAGTGCAAAGATTGCCCATTAAGGGGTCGGC
AGTTTCGATCCCGCGATCGTAACAAAGAAAAAGCAGCTGGCCCAGCACAG
GGCGACCCCGAGAATATGCTTCTTCCTTCAGAAAGGACTTTTTTTTGGAG
GTCACCCGGGGGGCCCCTCCGGGGGGAGTGGCTATGCCCCGCATAGCCCT
ACGCTCCTGGGCCGAAAATCCCGTAAGTAATCTTATTCCAGAAAAGAAAC
GACGAAGGGTTTCACACCAAACAGCTGCCGCGAAGCTGATGGAAAATGAA
TCCCGGAGTCAGCCAAAAAACATCAACGGACCCGAATTCTGGAGGCCCTA
CAGAATCTGTCTTCGACAAGAAAGTTTGAGAGGCAACAGCAATGGGGCTC
CCAAATACATCAACCTGATTAAAAAAGCTGCGGAAAATCCGCC
FMO13650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-3-RD | 1729 | CG3584-RD | 88..827 | 10..793 | 2545 | 92 | Plus |
| qkr58E-3-RB | 1433 | CG3584-RB | 88..827 | 10..793 | 2545 | 92 | Plus |
| qkr58E-3-RC | 1584 | CG3584-RC | 88..827 | 10..793 | 2545 | 92 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22411293..22411458 | 175..10 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 22411112..22411234 | 297..175 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 20901134..20901299 | 10..175 | 575 | 89.8 | Plus |
| 2R | 25286936 | 2R | 21773403..21773566 | 15..175 | 560 | 90.9 | Plus |
| 2L | 23513712 | 2L | 20923948..20924111 | 12..175 | 535 | 88.4 | Plus |
| 2R | 25286936 | 2R | 22594744..22594909 | 11..173 | 495 | 88 | Plus |
| 2L | 23513712 | 2L | 20924168..20924290 | 175..297 | 480 | 92.7 | Plus |
| 2R | 25286936 | 2R | 22650704..22650809 | 68..173 | 470 | 96.2 | Plus |
| 2R | 25286936 | 2R | 22650869..22650991 | 175..297 | 465 | 91.9 | Plus |
| 2R | 25286936 | 2R | 21773630..21773747 | 180..297 | 410 | 89.8 | Plus |
| 2R | 25286936 | 2R | 22594969..22595091 | 175..297 | 405 | 88.6 | Plus |
| 2L | 23513712 | 2L | 20901339..20901440 | 196..297 | 405 | 93.1 | Plus |
| 2R | 25286936 | 2R | 22410542..22410628 | 793..705 | 315 | 95.5 | Minus |
Blast to na_te.dros performed 2014-11-28 23:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3835..3882 | 534..487 | 114 | 70.8 | Minus |
FMO13650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-23 10:10:39 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-29 00:20:03 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:03 Download gff for
FMO13650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22410542..22410628 | 704..793 | 94 | <- | Minus |
| 2R | 22410687..22410798 | 580..703 | 86 | == | Minus |
| 2R | 22410865..22410877 | 492..504 | 100 | == | Minus |
| 2R | 22410932..22411051 | 298..429 | 90 | <- | Minus |
| 2R | 22411112..22411233 | 176..297 | 100 | <- | Minus |
| 2R | 22411293..22411458 | 10..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:39 Download gff for
FMO13650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18298047..18298133 | 704..793 | 94 | <- | Minus |
| arm_2R | 18298192..18298303 | 580..703 | 86 | == | Minus |
| arm_2R | 18298370..18298382 | 492..504 | 100 | == | Minus |
| arm_2R | 18298437..18298556 | 298..429 | 90 | <- | Minus |
| arm_2R | 18298617..18298738 | 176..297 | 100 | <- | Minus |
| arm_2R | 18298798..18298963 | 10..175 | 100 | | Minus |
