FMO13652.5prime Sequence
985 bp (876 high quality bases) assembled on 2013-08-23
> FMO13652.5prime
TCAGTCGACATGATGACTGAAAAGTTAAATTCTGGGCACACTAATTTAAC
AAGCAAGGGGATTATAAATGATCTTCAAATTGCTGGAAACACAAGTGACG
ATATGGGCTGGAAATCAAAGCTGAAGCTGCCGCCAAAGGACAACCGATTC
AAAACAACTGATGTGACCGATACGCGAGGCAATGAATTCGAGGAGTTTTG
CCTTAAAAGAGAACTGCTTATGGGTATATTCGAGAAGGGATGGGAGCGCC
CTTCGCCAATTCAGGAAGCAGCTATTCCTATAGCATTAAGTGGAAAAGAT
GTGCTGGCTCGGGCCAAGAACGGCACAGGCAAGACAGGAGCCTACTGCAT
CCCAGTTTTAGAACAAATCGACCCAACCAAGGACTACATTCAGGCACTTG
TGATGGTCCCCACCCGAGAGTTGGCGCTACAAACCTCACAGATATGTATT
GAGCTGGCGAAACATCTTGATATCCGGGTAATGGTCACAACGGGAGGTAC
CATTCTAAAGGATGACATTCTTCGTATTTATCAAAAAGTACAATTAATTA
TTGCCACTCCCGGACGAATATTAGATCTGATGGATAAGAAAGTTGCCGAT
ATGTCGCATTGCAGAATATTAGTTTTGGATGAGGCCGATAAGCTATTGTC
GCTTGATTTTCAAGGCATGCTGGATCATGTTATACTAAAGTTACCAAAGG
ATCCACAGATCTTGCTATTTTCCGCACATTTCCACTAACAGTCAGATTTC
ATGAGAAGCATTTACGCGAGCCTTACGAGATCACCTGATGGAGAGCTAAC
ACTGAAGGTGTCACTCAGTACTATGCATTCGTACAGGAGCGCAGAAAGTA
CACTGCTGATACGCTCTTTCGAGCTGCAGATCATCAGTCTATCATATTCT
GCATCACGCACGTGTCAGCTATGTCGAAGGATCACAGAGCTGATATGCTG
TACTATATACACGCTAGATTGCCCAGCACACAGAA
FMO13652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| me31B-RA | 1699 | CG4916-RA | 196..1198 | 10..985 | 4310 | 96.9 | Plus |
| me31B-RB | 1600 | CG4916-RB | 146..1099 | 59..985 | 4065 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10240680..10241058 | 160..538 | 1895 | 100 | Plus |
| 2L | 23513712 | 2L | 10241131..10241510 | 537..903 | 1295 | 95.5 | Plus |
| 2L | 23513712 | 2L | 10240491..10240592 | 59..160 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 10239536..10239586 | 10..60 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:38:34 has no hits.
FMO13652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:42 Download gff for
FMO13652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| me31B-RA | 196..1198 | 10..985 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:05 Download gff for
FMO13652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| me31B-RA | 196..1198 | 10..985 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:05 Download gff for
FMO13652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10239536..10239585 | 10..59 | 100 | -> | Plus |
| 2L | 10240492..10240591 | 60..159 | 100 | -> | Plus |
| 2L | 10240680..10241058 | 160..538 | 100 | -> | Plus |
| 2L | 10241133..10241606 | 539..985 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:42 Download gff for
FMO13652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10239536..10239585 | 10..59 | 100 | -> | Plus |
| arm_2L | 10240492..10240591 | 60..159 | 100 | -> | Plus |
| arm_2L | 10240680..10241058 | 160..538 | 100 | -> | Plus |
| arm_2L | 10241133..10241606 | 539..985 | 93 | | Plus |
