FMO13656.5prime Sequence
1024 bp (910 high quality bases) assembled on 2013-08-23
> FMO13656.5prime
TCAGTCGACATGGCTAACAGCTACGACATACCCAGTTGGGCTGGAAAACC
GCCCACTGGCTTACATCTGGATGTGCTAAAGGACGACAAACTAGTACAAA
AACTGATGGTGGATGAAAAAAGATGCTATCTATTTGGTCGCAACAGTCAA
ATGAACGACTTCTGCATAGACCATGCCTCTTGTTCGCGGGTCCACTCGGC
TTTTGTCTACCACAAGCACCTCAACATAGCCTACCTCGTGGATCTGGGGT
CCACTCATGGCACCTTTATTGGAACACTCAGATTGGAAGCGCACAAGCCC
ACACAGCTGCAGATTAATAGCACCTTCCACTTTGGGGCTTCTACCCGGAA
CTACATACTCAGGGAACGACCCTCTGGCCACCACAGCAACATCATGGAAG
ACCTGCCGCTCAGTGAAACCAGCGATGGCGCTCTCCTGGGCCTGCCCGAA
AGCCAAACGGAGCTTGATAATCTTACAGAATACAACACGGCCCACAATCG
GCGCATCTCAATGCTGGGCATCGATGATGATACCAATATGCGAAAGCAAA
ACGCCTTGAAACAGGGACGGCGCACTCGAAATGTCACATTTAACGATGAG
GAGATTGTCATCAATCCTGAGGATGTGGATCCTAATGTGGGACGCTTCAG
GAACTTGGTACAAACCACTGTGGTGCCCGCCAAGAGGGCACGCTGCGACG
TCAACCATATGGGCATCCATTCGGGCAACAGCAGTTTGTCCAGTGCCAAT
GCCGCACATGTACACCAAATGTTCCAGCAGAGCCTAGTTGACATGAAGCA
GCAGCATAGGGAAATGCCTCCGCCCAATGCGTGCTCACTCGCCTACTAAT
TCCCTATATCAAGGTCTACCGGCCGAATGCATGGCAGAGTGACCTAGAGC
CCATCTCCCCCGCTGAAGCAATTGATTCAAGTTGGCCTATTTGCTCCCCG
AATCCTGCGCTGAATGGCTGCCAGTCTATGAACGAAGACTGTGGAGAACC
TCGACATGGTCTCAAAGATGGCGT
FMO13656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NiPp1-RA | 1349 | CG8980-RA | 92..1097 | 10..1016 | 4500 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17003907..17004421 | 981..469 | 1965 | 95.6 | Minus |
| 2R | 25286936 | 2R | 17004753..17004968 | 253..38 | 1065 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17004483..17004697 | 468..254 | 1045 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:38:47 has no hits.
FMO13656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:48 Download gff for
FMO13656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NiPp1-RA | 89..1107 | 3..1024 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:13 Download gff for
FMO13656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NiPp1-RA | 89..1107 | 3..1024 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:13 Download gff for
FMO13656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17003865..17004421 | 469..1024 | 95 | <- | Minus |
| 2R | 17004483..17004697 | 254..468 | 99 | <- | Minus |
| 2R | 17004753..17004967 | 39..253 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:48 Download gff for
FMO13656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12892258..12892472 | 39..253 | 99 | <- | Minus |
| arm_2R | 12891370..12891926 | 469..1024 | 95 | <- | Minus |
| arm_2R | 12891988..12892202 | 254..468 | 99 | <- | Minus |
