FMO13657.5prime Sequence
666 bp (666 high quality bases) assembled on 2013-08-23
> FMO13657.5prime
TCAGTCGACATGAAGGAAATAAAAAGGAAATCAAAGCCAAAACGCAAGCC
CACTCGCATGGAAGTGGAGGAGATTGAGACCTCGGATAAACCACAGCCAG
AGGATGGTGAGTCTGCGAATGGGGAGGCAAATCCCTCGGATGAAGGCGAT
GAAATGGAGCTGGCCAGCTTCAAAGCCGCCTGCAGTTCCTCGGATCCCGC
GAAGAAAATCAAGAAGGGCATCATTTACATATCCAACATACCCAAGCACA
TGACCTTGACCCACCTGCGGGAAATCTTGGGCGAGTACGGCGGCATCGGC
AGAGCTTTCCTGCGGTCGCAGTCAAGTAAGCATCATAATATCCTCTTCGC
CGAGGGTTGGGTGGAATTCAAGTCGAAACATGTGGCCAAACAGCTCGTTC
TACTGCTGAACAATAAGCAGATATCCACGCGCAATAATTCCCCATTCTAT
TACTCACTGTGGAGCATGGAGTACCTGCCGCGCTTCAAGTGGGCCCGTCT
AGCCGAGCTCATGAACTTCGTGCAGGTCACCAACTCCCAGAACCATCTCG
AGTTCCTCAAGAAGAAGGCGAAGGAGGCCAAGGAAGTCAAGAAAGCCATG
AAGGTTCTGGCTGACAGACTTCTTGAGTTAGCGCTAGACTCTAACATCGC
AAGCTTTCTAGACCAT
FMO13657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG41562-RA | 642 | CG41562-RA | 1..639 | 10..648 | 3195 | 100 | Plus |
| CG40813-RB | 642 | CG40813-RB | 1..639 | 10..648 | 3150 | 99.5 | Plus |
| CG10993-RA | 715 | CG10993-RA | 224..668 | 210..648 | 1540 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22168088..22168410 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22173074..22173396 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22177938..22178260 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22182926..22183248 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22187803..22188125 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22192706..22193028 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22197607..22197929 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22202616..22202938 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22212761..22213083 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22217812..22218134 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22227006..22227328 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22232003..22232325 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22236998..22237320 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22247033..22247355 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22252015..22252337 | 326..648 | 1615 | 100 | Plus |
| X | 23542271 | X | 22143491..22143813 | 326..648 | 1600 | 99.7 | Plus |
| X | 23542271 | X | 22148222..22148544 | 326..648 | 1600 | 99.7 | Plus |
| X | 23542271 | X | 22153275..22153597 | 326..648 | 1600 | 99.7 | Plus |
| X | 23542271 | X | 22152886..22153203 | 10..327 | 1590 | 100 | Plus |
| X | 23542271 | X | 22236609..22236926 | 10..327 | 1590 | 100 | Plus |
| X | 23542271 | X | 22241616..22241933 | 10..327 | 1590 | 100 | Plus |
| X | 23542271 | X | 22246644..22246961 | 10..327 | 1590 | 100 | Plus |
| X | 23542271 | X | 22251626..22251943 | 10..327 | 1590 | 100 | Plus |
| X | 23542271 | X | 22197218..22197535 | 10..327 | 1575 | 99.7 | Plus |
| X | 23542271 | X | 22202227..22202544 | 10..327 | 1575 | 99.7 | Plus |
| X | 23542271 | X | 22212372..22212689 | 10..327 | 1575 | 99.7 | Plus |
| X | 23542271 | X | 22226617..22226934 | 10..327 | 1575 | 99.7 | Plus |
| X | 23542271 | X | 22158320..22158642 | 326..648 | 1570 | 99.1 | Plus |
| X | 23542271 | X | 22163356..22163678 | 326..648 | 1570 | 99.1 | Plus |
| X | 23542271 | X | 22242005..22242327 | 326..648 | 1570 | 99.1 | Plus |
| X | 23542271 | X | 22143102..22143419 | 10..327 | 1560 | 99.4 | Plus |
| X | 23542271 | X | 22147833..22148150 | 10..327 | 1560 | 99.4 | Plus |
| X | 23542271 | X | 22167699..22168016 | 10..327 | 1560 | 99.4 | Plus |
| X | 23542271 | X | 22192317..22192634 | 10..327 | 1560 | 99.4 | Plus |
| X | 23542271 | X | 22217423..22217740 | 10..327 | 1560 | 99.4 | Plus |
| X | 23542271 | X | 22157931..22158248 | 10..327 | 1545 | 99.1 | Plus |
| X | 23542271 | X | 22162967..22163284 | 10..327 | 1545 | 99.1 | Plus |
| X | 23542271 | X | 22231614..22231931 | 10..327 | 1545 | 99.1 | Plus |
| X | 23542271 | X | 22177549..22177866 | 10..327 | 1530 | 98.7 | Plus |
| X | 23542271 | X | 22182537..22182854 | 10..327 | 1530 | 98.7 | Plus |
| X | 23542271 | X | 22187414..22187731 | 10..327 | 1530 | 98.7 | Plus |
| X | 23542271 | X | 22172685..22173002 | 10..327 | 1515 | 98.4 | Plus |
| X | 23542271 | X | 13790385..13790705 | 648..328 | 1155 | 90.7 | Minus |
| X | 23542271 | X | 9085985..9086298 | 10..311 | 755 | 83.4 | Plus |
| X | 23542271 | X | 9086421..9086621 | 326..526 | 585 | 86.1 | Plus |
| X | 23542271 | X | 13790887..13791073 | 184..10 | 480 | 85 | Minus |
| X | 23542271 | X | 13790777..13790888 | 321..210 | 440 | 92.9 | Minus |
| X | 23542271 | X | 9087279..9087402 | 81..207 | 225 | 80.3 | Plus |
| X | 23542271 | X | 9088512..9088629 | 87..207 | 195 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:38:51 has no hits.
FMO13657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:50 Download gff for
FMO13657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG41562-RA | 1..642 | 10..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:16 Download gff for
FMO13657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG41562-RA | 1..642 | 10..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:16 Download gff for
FMO13657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22236609..22236924 | 10..325 | 100 | -> | Plus |
| X | 22236998..22237327 | 326..656 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:50 Download gff for
FMO13657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArmU | 5467096..5467411 | 10..325 | 99 | -> | Plus |
| ArmU | 5467485..5467814 | 326..656 | 98 | | Plus |
