FMO13658.5prime Sequence
963 bp (810 high quality bases) assembled on 2013-08-23
> FMO13658.5prime
TCAGTCGACATGGAAAAAATGGAAAACCCAAGCGAGATTACTGAGGAACA
GCCAACTACCACACACGAGTACCAGCCGCGTCTGAACGAGATAGCCCAAA
AGTTTCTCGCCGATTTGGACGAGGAGCGCCAGCGTTTGTCCGCGGAGTTT
CCACTTTGCGCACTGCTAATCGACGAGGCTAGGGACCGTGTCTACGCCAC
TGGTCGTATTCCCGGCAAGGAACTCTACGCAGACGTGTACCGGCAGAAGC
CGATGAAGATTATTCAAAAGGTCTTCGTGCCCGTTAACCAGTATCCCAAG
TTCAACTTCGCTGGCAAGATCCTGGGGCCCAAGGGGAACTCGCTGCGTCG
CCTTCAGGAGGAGACCCAGTGCAAGATTGCCCTCAAGGGTCGCAGTTCGA
TGCGCGATCGTAACAAAGAGGAAGAGCTGCGCAGCGACCCAAGATATGCC
CATCTTCAGAAGAATCTCTTTCTGGAGGTCAGCACGGTGGCCATACCGGG
CGGAGTGCCATTCCCGCATAGCCTACGCCCTGGCCGAGATTCGTAAGTAT
CTGATTCCAGACAATAACGACGAGGTTTCGCACGAGCAGCTGCGCGAGCT
GATGGAAATAGATCCCGAGTCGGCCAAGACTTTAGGGACTCAATCTGGAG
GCGTACAGATCTGTCAGGACAGCAATGGGGCTTCTAAGTACATCAATCTG
ATTAGCGGGTGCGAAATCCGTCCAAAGTCGCCGATATGGAGCAGTGACTA
TGATTATGATGACATCATATGCCCCCATTCATCTGCCCACGGGCTATGAG
TACAGCATACACGTCATCAAAATAGTGCGAAATTTAAACGTCATATCGTA
TCCGACTGACATGAAGCTGGGGCGCGAACCGCCATAAAGTTCTATAGCCC
ATCTTGATAGGCACTACGATATGAAATCTATGCCTGAGCACGGCAAGCTT
CTAGAACAATTCG
FMO13658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4021-RA | 1201 | CG4021-RA | 104..1058 | 10..941 | 4070 | 96.7 | Plus |
| qkr58E-3-RD | 1729 | CG3584-RD | 93..928 | 15..820 | 2240 | 85.7 | Plus |
| qkr58E-3-RB | 1433 | CG3584-RB | 93..928 | 15..820 | 2240 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21773807..21774167 | 299..658 | 1665 | 98.6 | Plus |
| 2R | 25286936 | 2R | 22410720..22411053 | 627..299 | 1095 | 89.9 | Minus |
| 2L | 23513712 | 2L | 20863446..20863772 | 629..299 | 1075 | 90.4 | Minus |
| 2R | 25286936 | 2R | 22595151..22595486 | 299..629 | 1045 | 88.7 | Plus |
| 2R | 25286936 | 2R | 22651051..22651386 | 299..629 | 1015 | 88.1 | Plus |
| 2R | 25286936 | 2R | 21773398..21773566 | 10..178 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 21773625..21773747 | 178..300 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 22411293..22411453 | 178..15 | 560 | 90.9 | Minus |
| 2R | 25286936 | 2R | 22650703..22650809 | 70..176 | 460 | 95.3 | Plus |
| 2R | 25286936 | 2R | 22594803..22594909 | 70..176 | 445 | 94.4 | Plus |
| 2L | 23513712 | 2L | 20901193..20901299 | 72..178 | 430 | 93.5 | Plus |
| 2R | 25286936 | 2R | 22594974..22595091 | 183..300 | 425 | 90.7 | Plus |
| 2R | 25286936 | 2R | 22411112..22411229 | 300..183 | 410 | 89.8 | Minus |
| 2L | 23513712 | 2L | 20923997..20924111 | 64..178 | 410 | 90.4 | Plus |
| 2L | 23513712 | 2L | 20924173..20924290 | 183..300 | 410 | 89.8 | Plus |
| 2R | 25286936 | 2R | 22650874..22650991 | 183..300 | 395 | 89 | Plus |
| 2L | 23513712 | 2L | 20901339..20901440 | 199..300 | 360 | 90.2 | Plus |
| 2R | 25286936 | 2R | 17471170..17471306 | 299..435 | 280 | 80.3 | Plus |
| 2R | 25286936 | 2R | 21774430..21774518 | 726..810 | 265 | 94.4 | Plus |
| 2R | 25286936 | 2R | 22416544..22416623 | 298..377 | 250 | 87.5 | Plus |
| 2R | 25286936 | 2R | 22414818..22414963 | 435..290 | 235 | 77.4 | Minus |
| 2R | 25286936 | 2R | 21774248..21774297 | 656..704 | 200 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:38:18 has no hits.
FMO13658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:32 Download gff for
FMO13658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4021-RA | 104..1064 | 10..947 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:57 Download gff for
FMO13658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4021-RA | 104..1064 | 10..947 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:57 Download gff for
FMO13658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21773398..21773566 | 10..178 | 100 | -> | Plus |
| 2R | 21773626..21773747 | 179..300 | 100 | -> | Plus |
| 2R | 21773809..21774167 | 301..658 | 99 | -> | Plus |
| 2R | 21774251..21774322 | 659..725 | 93 | -> | Plus |
| 2R | 21774430..21774518 | 726..810 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:32 Download gff for
FMO13658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17660903..17661071 | 10..178 | 100 | -> | Plus |
| arm_2R | 17661131..17661252 | 179..300 | 100 | -> | Plus |
| arm_2R | 17661314..17661672 | 301..658 | 99 | -> | Plus |
| arm_2R | 17661756..17661827 | 659..725 | 93 | -> | Plus |
| arm_2R | 17661935..17662023 | 726..810 | 95 | -> | Plus |
