FMO13659.5prime Sequence
853 bp (630 high quality bases) assembled on 2013-08-23
> FMO13659.5prime
TCAGTCGACATGGAAACCCCAAGCGAGTTAACTGAGAAACAGAACCAAGA
CCAACCTACCTACCAGCCGCGACTGAACGAGGTGGCCCAAAAGTTTCTCG
CCGATTTGGACGCGGAGCGCAAGCGATTGTCCGCGGAGTTTCCACTTTGC
GCTCTGCTAATCGACGAATCTGTGGACCGTGTCTACTCCACTGGTCGCAT
TCCCGGCAAGGAGCCCTTCGCAGACGTGTACCAGCAGAAGCCGATGAAGA
TTATCCAAAAGGTCTTCGTGCCTGTTAATAAGTTTCCCAAGTTCAACTTC
ACTGGCAAGATCCTAGGGCCCAAGGGCAACTCGCTGCGTCGCCTTCAGGA
GGAGACCCACTGCAAGATTGTCATCAAGGGTCGCAACTCGATGCGCGATC
GTAACAAAGAGGAGGAGCTGCGCAGCTCAGCGACCCGAGATATGCCCATC
TTCACAAGGATCTCTTTTTGGAGGTCAGCGCGGTGGCCCCTCCGGCGGAG
TGCTATGCACGGATAGCCTACGCCCTGCCGAGATCCGTAAGTACCTCATT
CCAGACGATACGACGATGTTTGGCACGAGCAGCAGCGCGAGCTGATGAAA
TGATCCCAGTCGCCAAGAAAGTACGGACTCATATGGCGCCTACGATCGAT
TTCGACAGCGATGAGCATCAGATAGGCTCCAGTACACACAGATAGCGAGT
ACGAAATCCGCGCGAGTCGCTATTTGGAGGAGTGATATGATTATGATGAC
ATCTAGTCTGCTCCCAGTCGTCGTCTAGCAGCTTTCTAGACATCGTGGCG
CCGGCCCAGGTAGTGTTCTATCTATCTTATCATATCTAATCCAACTAGCT
AGG
FMO13659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3927-RA | 1077 | CG3927-RA | 76..885 | 10..777 | 3040 | 94.6 | Plus |
| nsr-RB | 2523 | CG3875-RB | 132..895 | 45..772 | 2450 | 90.9 | Plus |
| nsr-RA | 1235 | CG3875-RA | 132..895 | 45..772 | 2450 | 90.9 | Plus |
| nsr-RB | 2523 | CG3875-RB | 82..128 | 10..56 | 190 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22595151..22595461 | 290..597 | 1405 | 99 | Plus |
| 2R | 25286936 | 2R | 22651051..22651361 | 290..597 | 1240 | 95.5 | Plus |
| 2R | 25286936 | 2R | 22410743..22411053 | 597..290 | 970 | 89.7 | Minus |
| 2R | 25286936 | 2R | 21773807..21774111 | 290..597 | 920 | 88.7 | Plus |
| 2L | 23513712 | 2L | 20863473..20863772 | 595..290 | 800 | 87 | Minus |
| 2R | 25286936 | 2R | 22594752..22594911 | 10..169 | 785 | 99.4 | Plus |
| 2R | 25286936 | 2R | 22594970..22595091 | 170..291 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 22650687..22650811 | 45..169 | 580 | 97.6 | Plus |
| 2R | 25286936 | 2R | 22650870..22650991 | 170..291 | 460 | 91.8 | Plus |
| 2R | 25286936 | 2R | 22411295..22411400 | 167..62 | 440 | 94.3 | Minus |
| 2R | 25286936 | 2R | 21773458..21773564 | 61..167 | 430 | 93.5 | Plus |
| 2R | 25286936 | 2R | 21773630..21773747 | 174..291 | 425 | 90.7 | Plus |
| 2L | 23513712 | 2L | 20901193..20901291 | 63..161 | 405 | 93.9 | Plus |
| 2R | 25286936 | 2R | 22411112..22411233 | 291..170 | 400 | 88.5 | Minus |
| 2L | 23513712 | 2L | 20924169..20924290 | 170..291 | 385 | 87.7 | Plus |
| 2L | 23513712 | 2L | 20924004..20924103 | 62..161 | 380 | 92 | Plus |
| 2L | 23513712 | 2L | 20901339..20901440 | 190..291 | 330 | 88.2 | Plus |
| 2R | 25286936 | 2R | 17471170..17471308 | 290..428 | 305 | 81.3 | Plus |
| 2R | 25286936 | 2R | 22414816..22414958 | 428..286 | 265 | 79 | Minus |
| 2R | 25286936 | 2R | 22416559..22416687 | 304..432 | 240 | 79.1 | Plus |
| 2R | 25286936 | 2R | 22650637..22650683 | 10..56 | 190 | 93.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:38:21 has no hits.
FMO13659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:33 Download gff for
FMO13659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3927-RA | 65..686 | 10..623 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:19:58 Download gff for
FMO13659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3927-RA | 76..697 | 10..623 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:19:58 Download gff for
FMO13659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22594970..22595091 | 170..291 | 100 | -> | Plus |
| 2R | 22594752..22594911 | 10..169 | 99 | -> | Plus |
| 2R | 22595153..22595492 | 292..623 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:33 Download gff for
FMO13659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18482257..18482416 | 10..169 | 99 | -> | Plus |
| arm_2R | 18482475..18482596 | 170..291 | 100 | -> | Plus |
| arm_2R | 18482658..18482997 | 292..623 | 97 | == | Plus |
