FMO13665.5prime Sequence
907 bp (777 high quality bases) assembled on 2013-08-23
> FMO13665.5prime
TCAGTCGACATGAAGCGAAATCGTCGTGCATTTGCTGGAAACAACAAGCC
ATTTGTCTTTGGAGGCATTTACGCCGCCAATGTCCAGGAGCAGCAGTCTT
CTCCGGTGGCTTTATATCCGACATCGGCCTCCCCGGTGGCTGTTCAATCG
CCACAGGACGCATTTTTGGCTGTTCAGTCGCCAGGGGCTCCTGCCCCCGT
TCAACTGGCCAACTCGTCCGACCAGCAGAATAATCCGGATGCGGACGCCA
TTGCCTCCAAACTGCCCATGCCAGTTATCATCAAGGAGGAGCCGATCTCT
GTCAACGATGAACCGTCCGTCGACAATATAGAGGACAATACCAGTGCCAG
TACCAGTGCCAGCGGCATCGGGGGCAAGATCCCATTTAAAAAAATCTTCC
AAAAGCGCAAGAAGTCGTCTGAACGCACTCGGGACAAGAAGTTGCGACAG
AACCGCCAGCTGCGCAAGTCCATGCTCCCCAAGAACGCTCTGATGGCCCT
CAACGAGGTGAAGGGCGTGACCATCAGCGATTTCACCATCGACAGCAATA
CCGACGGGGGATTCACGGCCGTTGTCACTGTCAACTCGAATCAGTACGAG
GGCAAGGTACCTCGAAAATGACAGCCAAGAACGCGGCCTGCGAGAAGGCT
TGGCGCGATTTTATTATTGCAAAAATGACCCCCAAGCCGCCCCGTATTCA
CCAGGTGAGATGGGTTCGGAGCCAATGGATATCACGAGGATGAGCCGATG
CACCGGATGATGATCTGCCATGTGAATCTGCTCGTTGCCATCTACAGCTG
TTCGCGAGTGGGACGGGAGGGCTATGTCTGCCGAATGCACCTTCGCAATG
CTGCCACAGGCGGGAGGGGATGCCGACTCAGTCCCCCTGTGCGAAGAACA
AAAGACG
FMO13665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DIP1-RC | 2559 | CG17686-RC | 113..998 | 10..875 | 3960 | 97.7 | Plus |
| DIP1-RI | 3477 | CG17686-RI | 1094..1916 | 73..875 | 3645 | 97.6 | Plus |
| DIP1-RH | 2466 | CG17686-RH | 83..905 | 73..875 | 3645 | 97.6 | Plus |
| DIP1-RI | 3477 | CG17686-RI | 113..175 | 10..72 | 315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21628361..21628709 | 421..73 | 1745 | 100 | Minus |
| X | 23542271 | X | 21626539..21626891 | 769..421 | 1565 | 98.9 | Minus |
| X | 23542271 | X | 21629973..21630036 | 73..10 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:39:05 has no hits.
FMO13665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:55 Download gff for
FMO13665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DIP1-RC | 114..1029 | 1..892 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:23 Download gff for
FMO13665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DIP1-RC | 104..1019 | 1..892 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:23 Download gff for
FMO13665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21626396..21626890 | 422..892 | 94 | <- | Minus |
| X | 21628361..21628709 | 73..421 | 100 | <- | Minus |
| X | 21629974..21630041 | 1..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:55 Download gff for
FMO13665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21497423..21497917 | 422..892 | 94 | <- | Minus |
| arm_X | 21499388..21499736 | 73..421 | 100 | <- | Minus |
| arm_X | 21501001..21501068 | 1..72 | 93 | | Minus |
